Steve Yegge b6870de7f8 Fix: Change file permissions from 0644 to 0600 for security ...

The gosec linter (G302) requires file permissions to be 0600 or less
for security. Updated atomicWriteFile to use 0600 (owner read/write only)
instead of 0644 (world readable).

This affects config files written by bd setup commands (cursor, aider,
claude), making them only accessible by the owner.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

2025-11-23 20:11:52 -08:00

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doctor

Fix linter issues and test failures

2025-11-22 00:11:45 -08:00

setup

Fix: Change file permissions from 0644 to 0600 for security

2025-11-23 20:11:52 -08:00

templates

Improve pre-push hook: suggest bd sync with auto-sync option

2025-11-23 16:10:02 -08:00

testdata

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autoflush.go

refactor: Delete 7 redundant tests from main_test.go (3x speedup)

2025-11-21 21:29:43 -05:00

autoimport_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

autoimport.go

Fix: Change default JSONL filename from beads.jsonl to issues.jsonl

2025-11-21 23:34:22 -08:00

autostart_test.go

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clean_security_test.go

test: Add security and error handling tests for lint warnings

2025-11-21 19:30:48 -05:00

clean.go

test: Add security and error handling tests for lint warnings

2025-11-21 19:30:48 -05:00

cleanup.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

cli_fast_test.go

feat: Add label operations to bd update command

2025-11-21 22:17:26 -05:00

comments_test.go

test: Refactor P1 test files to use shared DB pattern (bd-1rh)

2025-11-21 15:51:07 -05:00

comments.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

compact_test.go

test: Refactor compact_test.go to use shared DB pattern (bd-1rh)

2025-11-21 16:13:18 -05:00

compact.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

config_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

config.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

count.go

feat: Add 'bd count' command for counting and grouping issues

2025-11-21 19:21:05 -05:00

create_test.go

test: Refactor P1 test files to use shared DB pattern (bd-1rh)

2025-11-21 15:51:07 -05:00

create.go

Fix GH#366: Encourage descriptions when creating issues

2025-11-23 14:14:40 -08:00

daemon_autoimport_test.go

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daemon_autostart.go

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daemon_config.go

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daemon_crash_test.go

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daemon_debouncer_test.go

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daemon_debouncer.go

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daemon_event_loop.go

feat: Complete GH #353 follow-up phases (bd-9nw, bd-u3t, bd-e0o)

2025-11-21 19:32:45 -05:00

daemon_lifecycle.go

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daemon_lock_test.go

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daemon_lock_unix.go

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daemon_lock_wasm.go

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daemon_lock_windows.go

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daemon_lock.go

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daemon_logger.go

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daemon_parent_test.go

test: Tag 16 slow integration tests with build tags

2025-11-21 14:40:22 -05:00

daemon_rotation_test.go

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daemon_server.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

daemon_sync_branch_test.go

feat: Respect BEADS_SYNC_BRANCH environment variable

2025-11-22 18:17:19 -08:00

daemon_sync_branch.go

feat: Respect BEADS_SYNC_BRANCH environment variable

2025-11-22 18:17:19 -08:00

daemon_sync_test.go

Fix Windows and Nix test failures

2025-11-22 10:59:40 -08:00

daemon_sync.go

Fix Windows and Nix test failures

2025-11-22 10:59:40 -08:00

daemon_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

daemon_unix_test.go

feat: Complete GH #353 follow-up phases (bd-9nw, bd-u3t, bd-e0o)

2025-11-21 19:32:45 -05:00

daemon_unix.go

feat: Complete GH #353 follow-up phases (bd-9nw, bd-u3t, bd-e0o)

2025-11-21 19:32:45 -05:00

daemon_wasm.go

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daemon_watcher_platform_test.go

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daemon_watcher_test.go

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daemon_watcher.go

fix: address critical resource leaks and error handling issues (#327)

2025-11-20 08:13:06 -08:00

daemon_windows.go

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daemon.go

Fix: Daemon respects auto-commit/auto-push DB config (#360)

2025-11-22 16:57:23 -08:00

daemons_test.go

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daemons.go

fix: address critical resource leaks and error handling issues (#327)

2025-11-20 08:13:06 -08:00

delete_test.go

test: Tag 16 slow integration tests with build tags

2025-11-21 14:40:22 -05:00

delete.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

deletion_tracking_test.go

Fix: Change default JSONL filename from beads.jsonl to issues.jsonl

2025-11-21 23:34:22 -08:00

deletion_tracking.go

Fix lint errors: handle error return values

2025-11-15 12:52:34 -08:00

dep_test.go

test: Refactor P1 test files to use shared DB pattern (bd-1rh)

2025-11-21 15:51:07 -05:00

dep.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

detect_pollution.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

direct_mode_test.go

fix(test): Complete rootCtx initialization fix for all hanging tests (issue #355)

2025-11-21 23:09:47 -08:00

direct_mode.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

doctor_test.go

feat: Add metadata.json version tracking validation to bd doctor (bd-u4sb)

2025-11-23 17:28:25 -08:00

doctor.go

feat: Add metadata.json version tracking validation to bd doctor (bd-u4sb)

2025-11-23 17:28:25 -08:00

duplicates_test.go

feat: Add sandbox escape hatches for daemon lock issues (GH #353 Phase 1)

2025-11-21 18:53:34 -05:00

duplicates.go

feat: Add issue IDs to TODO comments

2025-11-21 19:01:42 -05:00

epic_test.go

test: Refactor epic_test.go to use shared DB pattern (P2)

2025-11-21 16:14:30 -05:00

epic.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

export_import_test.go

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export_integrity_integration_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

export_mtime_test.go

test: Tag 16 slow integration tests with build tags

2025-11-21 14:40:22 -05:00

export_staleness_test.go

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export_test.go

Fix context propagation lifecycle bugs

2025-11-20 21:54:11 -05:00

export.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

flags.go

feat: Add --body flag as alias for --description

2025-11-21 20:08:55 -05:00

flush_manager_test.go

Fix linter issues and test failures

2025-11-22 00:11:45 -08:00

flush_manager.go

Fix linter issues and test failures

2025-11-22 00:11:45 -08:00

git_sync_test.go

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helpers_test.go

bd sync: 2025-11-09 14:53:59

2025-11-09 14:53:59 -08:00

hooks_test.go

Add tests and documentation for --shared hooks feature

2025-11-23 12:39:11 -08:00

hooks.go

Add --shared flag to bd hooks install for versioned hooks

2025-11-23 12:36:38 -08:00

import_bug_test.go

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import_cancellation_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

import_idempotent_test.go

fix(test): Complete rootCtx initialization fix for all hanging tests (issue #355)

2025-11-21 23:09:47 -08:00

import_mtime_test.go

fix: Fix daemon export leaving JSONL newer than database (issues #301, #321)

2025-11-19 05:06:12 -05:00

import_multipart_id_test.go

bd sync: 2025-11-09 14:53:59

2025-11-09 14:53:59 -08:00

import_profile_test.go

test: Tag 16 slow integration tests with build tags

2025-11-21 14:40:22 -05:00

import_shared.go

…

import_uncommitted_test.go

test: Tag 16 slow integration tests with build tags

2025-11-21 14:40:22 -05:00

import.go

Fix GH#367: bd import defaulting to stdin is confusing

2025-11-23 11:15:34 -08:00

info_test.go

feat: Add bd info --whats-new for agent version awareness (bd-eiz9)

2025-11-08 02:28:54 -08:00

info.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

init_contributor.go

Annotate gosec-safe file accesses

2025-11-17 10:12:46 -07:00

init_hooks_test.go

Fix CI regressions and stabilize tests

2025-11-17 10:06:35 -07:00

init_team.go

fix: Auto-configure sync.branch during bd init (bd-flil)

2025-11-23 19:42:21 -08:00

init_test.go

fix: Support both canonical and legacy JSONL filenames in merge driver check

2025-11-23 20:07:26 -08:00

init.go

fix: Support both canonical and legacy JSONL filenames in merge driver check

2025-11-23 20:07:26 -08:00

integrity_content_test.go

test: Tag 16 slow integration tests with build tags

2025-11-21 14:40:22 -05:00

integrity_test.go

test: Refactor integrity_test.go to use shared DB pattern (bd-1rh P2)

2025-11-21 16:11:56 -05:00

integrity.go

Complete bd-ar2 P2 tasks: metadata, resurrection, and testing improvements

2025-11-21 11:40:37 -05:00

jsonl_integrity_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

label_test.go

…

label.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

list_test.go

test: Refactor P1 test files to use shared DB pattern (bd-1rh)

2025-11-21 15:51:07 -05:00

list.go

feat: Add built-in version tracking to bd (bd-loka)

2025-11-23 17:09:17 -08:00

main_test.go

Fix: Change default JSONL filename from beads.jsonl to issues.jsonl

2025-11-21 23:34:22 -08:00

main.go

fix: Code review fixes for auto-migration (bd-jgxi)

2025-11-23 18:28:01 -08:00

markdown_test.go

…

markdown.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

merge_security_test.go

fix: skip /etc/passwd check on Windows in security test (#363)

2025-11-22 16:49:29 -08:00

merge.go

Fix: Change default JSONL filename from beads.jsonl to issues.jsonl

2025-11-21 23:34:22 -08:00

message.go

Fix lint errors: handle error return values

2025-11-15 12:52:34 -08:00

migrate_hash_ids_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

migrate_hash_ids.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

migrate_issues.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

migrate_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

migrate.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

nodb_test.go

bd sync: 2025-11-09 14:53:59

2025-11-09 14:53:59 -08:00

nodb.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

onboard_test.go

Handle formatting errors in onboard renderer

2025-11-17 11:32:37 -07:00

onboard.go

feat: Add GitHub Copilot support with .github/copilot-instructions.md

2025-11-21 20:52:18 -05:00

output_test.go

…

prime.go

Annotate gosec-safe file accesses

2025-11-17 10:12:46 -07:00

quickstart.go

…

ready_test.go

test: Refactor P1 test files to use shared DB pattern (bd-1rh)

2025-11-21 15:51:07 -05:00

ready.go

feat: Add built-in version tracking to bd (bd-loka)

2025-11-23 17:09:17 -08:00

reinit_test.go

Fix: Change default JSONL filename from beads.jsonl to issues.jsonl

2025-11-21 23:34:22 -08:00

rename_prefix_repair_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

rename_prefix_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

rename_prefix.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

reopen_test.go

…

reopen.go

feat: Add issue IDs to TODO comments

2025-11-21 19:01:42 -05:00

repair_deps_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

repair_deps.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

repo.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

restore_test.go

…

restore.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

sandbox_test.go

feat: Complete GH #353 follow-up phases (bd-9nw, bd-u3t, bd-e0o)

2025-11-21 19:32:45 -05:00

sandbox_unix.go

feat: Complete GH #353 follow-up phases (bd-9nw, bd-u3t, bd-e0o)

2025-11-21 19:32:45 -05:00

sandbox_windows.go

feat: Complete GH #353 follow-up phases (bd-9nw, bd-u3t, bd-e0o)

2025-11-21 19:32:45 -05:00

scripttest_test.go

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search_test.go

feat: Add date and priority filters to bd search (bd-au0.5)

2025-11-21 22:46:12 -05:00

search.go

Fix linter issues and test failures

2025-11-22 00:11:45 -08:00

setup.go

Add Aider integration for beads issue tracking

2025-11-23 15:13:54 -08:00

show.go

feat: Add label operations to bd update command

2025-11-21 22:17:26 -05:00

simple_helpers_test.go

…

snapshot_manager.go

Annotate gosec-safe file accesses

2025-11-17 10:12:46 -07:00

stale_test.go

test: Refactor P1 test files to use shared DB pattern (bd-1rh)

2025-11-21 15:51:07 -05:00

stale.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

staleness.go

Fix GH#367: bd import defaulting to stdin is confusing

2025-11-23 11:15:34 -08:00

status_test.go

Fix: TestGetAssignedStatus - Missing rootCtx initialization

2025-11-21 23:22:12 -08:00

status.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

sync_local_only_test.go

test: Tag 16 slow integration tests with build tags

2025-11-21 14:40:22 -05:00

sync_merge_test.go

Fix: Change default JSONL filename from beads.jsonl to issues.jsonl

2025-11-21 23:34:22 -08:00

sync_test.go

feat: Respect BEADS_SYNC_BRANCH environment variable

2025-11-22 18:17:19 -08:00

sync.go

fix: Auto-configure sync.branch during bd init (bd-flil)

2025-11-23 19:42:21 -08:00

template_security_test.go

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template_test.go

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template.go

…

test_helpers_test.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

test_wait_helper.go

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upgrade.go

fix: Code review fixes for bd-loka

2025-11-23 17:16:27 -08:00

validate_test.go

test: Refactor validate_test.go - remove ALL DB setup (P2)

2025-11-21 16:14:30 -05:00

validate.go

Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)

2025-11-20 21:57:23 -05:00

version_test.go

…

version_tracking_test.go

fix: Code review fixes for auto-migration (bd-jgxi)

2025-11-23 18:28:01 -08:00

version_tracking.go

fix: Code review fixes for auto-migration (bd-jgxi)

2025-11-23 18:28:01 -08:00

version.go

fix: Auto-configure sync.branch during bd init (bd-flil)

2025-11-23 19:42:21 -08:00

worktree_test.go

Improve cmd/bd test coverage from 20.2% to 23.3%

2025-11-08 18:22:28 -08:00

worktree.go

…