bd mol run = bond + assign + pin:
- Bonds the molecule (creates issues from template)
- Assigns root to the caller
- Sets root status to in_progress
- Pins root issue for session recovery
After a crash or session reset, the pinned root ensures the agent
can resume from where it left off by checking 'bd ready'.
This is the Gas Town integration point that makes molecules immortal.
Closes: bd-icnf
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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