Steve Yegge 8e17dcff6d feat(mol): add bd mol run command for durable execution ...

bd mol run = bond + assign + pin:
- Bonds the molecule (creates issues from template)
- Assigns root to the caller
- Sets root status to in_progress
- Pins root issue for session recovery

After a crash or session reset, the pinned root ensures the agent
can resume from where it left off by checking 'bd ready'.

This is the Gas Town integration point that makes molecules immortal.

Closes: bd-icnf

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2025-12-21 00:07:19 -08:00

..

doctor

fix(doctor): check .local_version instead of deprecated LastBdVersion (fixes #662)

2025-12-20 14:41:13 -08:00

setup

fix(setup): preserve symlinks in atomicWriteFile

2025-12-20 20:15:55 -05:00

templates/hooks

chore: bump version to 0.32.1

2025-12-20 21:56:28 -08:00

testdata

…

.gitattributes

Fix tests (bd-6ss and sub-issues) (#626)

2025-12-18 18:23:30 -08:00

@AGENTS.md

Fix tests (bd-6ss and sub-issues) (#626)

2025-12-18 18:23:30 -08:00

AGENTS.md

Fix tests (bd-6ss and sub-issues) (#626)

2025-12-18 18:23:30 -08:00

audit.go

feat(audit): add append-only agent audit trail (.beads/interactions.jsonl)

2025-12-20 03:24:51 -08:00

autoflush.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

autoimport_test.go

fix: use proper YAML parsing for no-db mode detection (bd-r6k2)

2025-12-07 21:09:32 +11:00

autoimport.go

feat(jsonl): add omitempty to reduce JSONL bloat (beads-399)

2025-12-19 23:18:11 -08:00

autostart_test.go

Fix tests (bd-6ss and sub-issues) (#626)

2025-12-18 18:23:30 -08:00

clean_security_test.go

…

clean.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

cleanup.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

cli_fast_test.go

fix(storage): persist close_reason to issues table on close (#551)

2025-12-14 14:18:01 -08:00

comments_test.go

…

comments.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

compact_test.go

feat: add --hard flag to bd cleanup for bypassing tombstone TTL safety

2025-12-16 01:25:57 -08:00

compact.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

config_test.go

…

config.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

count.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

create_form_test.go

cleanup

2025-12-16 17:26:06 -08:00

create_form.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

create_test.go

…

create.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

daemon_autoimport_test.go

…

daemon_autostart.go

Auto-disable daemon in git worktrees for safety (#567)

2025-12-16 00:06:19 -08:00

daemon_basics_test.go

Fix tests (bd-6ss and sub-issues) (#626)

2025-12-18 18:23:30 -08:00

daemon_config.go

…

daemon_crash_test.go

…

daemon_debouncer_test.go

…

daemon_debouncer.go

…

daemon_event_loop.go

refactor: rename last_import_hash to jsonl_content_hash (bd-39o)

2025-11-28 23:14:12 -08:00

daemon_health_freebsd.go

fix(unix): handle Statfs field types for disk space check (#646)

2025-12-19 17:50:14 -08:00

daemon_health_unix.go

fix(unix): handle Statfs field types for disk space check (#646)

2025-12-19 17:50:14 -08:00

daemon_health_wasm.go

feat: implement health checks in daemon event loop (bd-gqo)

2025-11-28 23:10:44 -08:00

daemon_health_windows.go

feat: implement health checks in daemon event loop (bd-gqo)

2025-11-28 23:10:44 -08:00

daemon_integration_test.go

Fix tests (bd-6ss and sub-issues) (#626)

2025-12-18 18:23:30 -08:00

daemon_lifecycle.go

Merge bd-cddj-nux: GH#519

2025-12-16 01:17:25 -08:00

daemon_local_test.go

feat(daemon): add --local flag for git-free daemon operation (#433)

2025-12-01 17:37:56 -08:00

daemon_lock_test.go

…

daemon_lock_unix.go

…

daemon_lock_wasm.go

…

daemon_lock_windows.go

…

daemon_lock.go

…

daemon_logger.go

…

daemon_parent_test.go

Fix integration test compilation errors in cmd/bd

2025-12-11 07:11:15 -05:00

daemon_rotation_test.go

…

daemon_server.go

…

daemon_sync_branch_test.go

Update pre-commit hook regression test for proper isolation

2025-12-11 07:11:42 -05:00

daemon_sync_branch.go

feat: add Git worktree compatibility (PR #478)

2025-12-13 12:50:33 -08:00

daemon_sync_test.go

refactor: rename last_import_hash to jsonl_content_hash (bd-39o)

2025-11-28 23:14:12 -08:00

daemon_sync.go

feat(jsonl): add omitempty to reduce JSONL bloat (beads-399)

2025-12-19 23:18:11 -08:00

daemon_test.go

Fix integration test compilation errors in cmd/bd

2025-12-11 07:11:15 -05:00

daemon_unix_test.go

…

daemon_unix.go

…

daemon_wasm.go

…

daemon_watcher_platform_test.go

…

daemon_watcher_test.go

…

daemon_watcher.go

feat: add Git worktree compatibility (PR #478)

2025-12-13 12:50:33 -08:00

daemon_windows.go

…

daemon.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

daemons_test.go

…

daemons.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

defer.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

delete_test.go

…

delete.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

deletion_tracking_test.go

fix(multi-repo): filter issues by prefix when flushing from non-primary repos (GH #437)

2025-12-01 21:17:56 -08:00

deletion_tracking.go

docs: add detailed comments explaining ID formats and merge deletion logic

2025-12-16 00:17:40 -08:00

dep_test.go

Fix tests (bd-6ss and sub-issues) (#626)

2025-12-18 18:23:30 -08:00

dep.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

detect_pollution.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

direct_mode_test.go

…

direct_mode.go

fix: improve JSONL-only mode detection and error messages (GH #534)

2025-12-13 12:50:33 -08:00

docs.md

docs: Add comprehensive documentation for version reporting changes

2025-12-13 10:04:01 +11:00

doctor_test.go

fix(doctor): check .local_version instead of deprecated LastBdVersion (fixes #662)

2025-12-20 14:41:13 -08:00

doctor.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

duplicate.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

duplicates_test.go

…

duplicates.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

epic_test.go

…

epic.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

errors.go

feat: add --readonly flag for worker sandboxes (gt-ymo)

2025-12-02 23:44:22 -08:00

export_import_test.go

test(export): add test for tombstone inclusion in JSONL export (bd-yk8w)

2025-12-07 21:14:13 +11:00

export_integrity_integration_test.go

fix: replace string(rune()) with strconv.Itoa in tests (bd-fmc)

2025-12-02 22:41:07 -08:00

export_mtime_test.go

…

export_staleness_test.go

…

export_test.go

…

export.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

flags.go

bd create: support --description=- for stdin input

2025-12-19 01:47:03 -08:00

flush_manager_test.go

…

flush_manager.go

…

fork_protection_test.go

feat: auto-protect forks from committing upstream issue database

2025-12-18 18:56:59 -08:00

fork_protection.go

feat: auto-protect forks from committing upstream issue database

2025-12-18 18:56:59 -08:00

git_sync_test.go

…

graph_test.go

fix(graph): pass subgraph to renderGraph to fix nil pointer crash

2025-12-20 01:59:31 -08:00

graph.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

helpers_test.go

…

hooks_test.go

feat(hooks): implement thin shim pattern (GH#615)

2025-12-20 02:38:56 -08:00

hooks.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

import_bug_test.go

…

import_cancellation_test.go

…

import_idempotent_test.go

…

import_mtime_test.go

…

import_multipart_id_test.go

…

import_profile_test.go

…

import_shared.go

refactor: remove all deletions.jsonl code (bd-fom)

2025-12-16 14:20:49 -08:00

import_uncommitted_test.go

…

import.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

info_test.go

…

info.go

Merge branch 'main' into subtle-ux-improvements

2025-12-20 23:26:35 -08:00

init_contributor.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

init_hooks_test.go

feat: add Git worktree compatibility (PR #478)

2025-12-13 12:50:33 -08:00

init_team.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

init_test.go

fix(init): handle read-only gitignore gracefully in stealth mode (#663)

2025-12-20 16:43:43 -08:00

init.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

integrity_content_test.go

…

integrity_test.go

refactor: remove all deletions.jsonl code (bd-fom)

2025-12-16 14:20:49 -08:00

integrity.go

fix: Include tombstones in DB count for stale check (bd-53c)

2025-12-18 00:41:49 -08:00

jira_test.go

test: add unit tests for Jira integration

2025-11-30 15:35:30 -08:00

jira.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

jsonl_integrity_test.go

fix: resolve P2 sync noise and cleanup issues

2025-12-16 00:56:06 -08:00

label_test.go

…

label.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

linear_test.go

feat: Linear Integration (#655)

2025-12-19 17:58:24 -08:00

linear.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

list_test.go

…

list.go

Merge branch 'main' into subtle-ux-improvements

2025-12-20 23:26:35 -08:00

main_test.go

fix(ci): more changes to fix failing CI (#415)

2025-11-29 22:24:29 -08:00

main.go

feat(ux): reorganize command groups and add Tufte-inspired help styling

2025-12-20 12:57:16 -08:00

markdown_test.go

…

markdown.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

merge_security_test.go

…

merge.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

migrate_hash_ids_test.go

…

migrate_hash_ids.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

migrate_issues.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

migrate_sync_test.go

test: replace manual os.Chdir with t.Chdir in tests (#457)

2025-12-04 11:21:43 -08:00

migrate_sync.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

migrate_test.go

…

migrate_tombstones.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

migrate.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

mol.go

feat(mol): add bd mol run command for durable execution

2025-12-21 00:07:19 -08:00

nodb_test.go

test: replace manual os.Chdir with t.Chdir in tests (#457)

2025-12-04 11:21:43 -08:00

nodb.go

feat(jsonl): add omitempty to reduce JSONL bloat (beads-399)

2025-12-19 23:18:11 -08:00

onboard_test.go

refactor(onboard): simplify to minimal snippet pointing to bd prime

2025-12-18 11:48:02 -08:00

onboard.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

output_test.go

…

pin.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

prime_test.go

feat(prime): add --stealth flag for flush-only workflow

2025-12-03 18:08:33 -08:00

prime.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

quick.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

quickstart.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

readonly_test.go

feat: add --readonly flag for worker sandboxes (gt-ymo)

2025-12-02 23:44:22 -08:00

ready_test.go

feat(ready): add --unassigned filter for bd ready

2025-11-30 00:38:57 -08:00

ready.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

reinit_test.go

fix(init): bootstrap from sync-branch when configured (bd-0is)

2025-12-05 14:47:02 -08:00

relate_test.go

Add tests for Decision 004 Phase 4 edge schema consolidation

2025-12-18 11:25:17 -08:00

relate.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

rename_prefix_repair_test.go

fix(rename-prefix): use hash IDs instead of sequential in --repair mode

2025-12-15 23:59:21 -08:00

rename_prefix_test.go

…

rename_prefix.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

reopen_test.go

…

reopen.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

repair_deps_test.go

…

repair_deps.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

repo.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

reset_test.go

feat(schema): add messaging fields for bd-kwro epic

2025-12-16 13:06:47 -08:00

reset.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

restore_test.go

test: replace manual os.Chdir with t.Chdir in tests (#457)

2025-12-04 11:21:43 -08:00

restore.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

sandbox_test.go

…

sandbox_unix.go

…

sandbox_windows.go

…

scripttest_test.go

…

search_test.go

…

search.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

setup.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

show.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

simple_helpers_test.go

…

snapshot_manager.go

…

stale_test.go

fix: replace string(rune()) with strconv.Itoa in tests (bd-fmc)

2025-12-02 22:41:07 -08:00

stale.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

staleness.go

…

status_test.go

refactor(status): merge stats command into status (GH#644)

2025-12-20 13:14:39 -08:00

status.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

sync_branch_priority_test.go

fix(sync): respect sync.branch config when no upstream tracking (#640)

2025-12-19 17:52:27 -08:00

sync_local_only_test.go

test: replace manual os.Chdir with t.Chdir in tests (#457)

2025-12-04 11:21:43 -08:00

sync_merge_test.go

…

sync_test.go

refactor: remove all deletions.jsonl code (bd-fom)

2025-12-16 14:20:49 -08:00

sync.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

template_test.go

refactor: Remove YAML template system entirely

2025-12-18 00:18:37 -08:00

template.go

feat(mol): add bd mol commands, deprecate bd template

2025-12-21 00:01:53 -08:00

test_helpers_test.go

feat: add Git worktree compatibility (PR #478)

2025-12-13 12:50:33 -08:00

test_wait_helper.go

…

thanks.go

DOCTOR IMPROVEMENTS: visual improvements/grouping + add comprehensive tests + fix gosec warnings (#656)

2025-12-20 03:10:06 -08:00

thread_test.go

Add tests for Decision 004 Phase 4 thread traversal functions

2025-12-18 11:30:26 -08:00

tips_example_test.go

…

tips_test.go

…

tips.go

feat: add Git worktree compatibility (PR #478)

2025-12-13 12:50:33 -08:00

undefer.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

unpin.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

upgrade.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

validate_test.go

fix: add test parallelism and increase Windows CI timeout

2025-12-03 18:30:53 -08:00

validate.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

version_test.go

fix: Add commit and branch to bd version output (github #503)

2025-12-13 10:04:01 +11:00

version_tracking_test.go

test: replace manual os.Chdir with t.Chdir in tests (#457)

2025-12-04 11:21:43 -08:00

version_tracking.go

chore: remove obsolete BD_GUIDE.md references

2025-12-20 20:50:33 -08:00

version.go

chore: bump version to 0.32.1

2025-12-20 21:56:28 -08:00

worktree_daemon_test.go

Auto-disable daemon in git worktrees for safety (#567)

2025-12-16 00:06:19 -08:00

worktree_test.go

…

worktree.go

Auto-disable daemon in git worktrees for safety (#567)

2025-12-16 00:06:19 -08:00