Steve Yegge a6bba83f09 fix: bd repair - add transaction, backup, dirty_issues marking ...

Code review fixes for critical issues:
- Wrap all DELETEs in a transaction with rollback on error
- Create .pre-repair backup before any destructive operations
- Mark parent issues as dirty when deleting orphaned depends_on refs
- Fix misleading PreRun comment

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2025-12-29 12:47:34 -08:00

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