Steve Yegge 9057aeba17 fix(gitignore): switch to whitelist approach for .beads/.gitignore (#473) ...

The .beads/.gitignore now ignores everything by default and explicitly
whitelists tracked files. This fixes confusion about which files to
commit when using protected branches workflow.

Changes:
- Use `*` to ignore all by default, then `!file` to whitelist
- Fix config.json -> config.yaml (wrong filename in negation)
- Update doctor check to validate new patterns
- Update PROTECTED_BRANCHES.md documentation
- Simplify git add instructions to just `git add .beads/`

Fixes #473

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2025-12-13 10:14:05 +11:00

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