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b3e76ff1f69c8df0cb4b3cf4dd35fea635af3e0e
beads/cmd/bd
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Steve Yegge b3e76ff1f6 feat: Add sandbox escape hatches for daemon lock issues (GH #353 Phase 1) 
Implements three quick fixes for users stuck in sandboxed environments
(e.g., Codex) where daemon cannot be stopped:

1. **--force flag for bd import**
   - Forces metadata update even when DB is synced with JSONL
   - Fixes stuck state caused by stale daemon cache
   - Shows: "Metadata updated (database already in sync with JSONL)"

2. **--allow-stale global flag**
   - Emergency escape hatch to bypass staleness check
   - Shows warning: "⚠️  Staleness check skipped (--allow-stale)"
   - Allows operations on potentially stale data

3. **Improved error message**
   - Added sandbox-specific guidance to staleness error
   - Suggests --sandbox, --force, and --allow-stale flags
   - Provides clear fix steps for different scenarios

Also fixed:
- Removed unused import in cmd/bd/duplicates_test.go

Follow-up work filed:
- bd-u3t: Phase 2 - Sandbox auto-detection
- bd-e0o: Phase 3 - Daemon robustness enhancements
- bd-9nw: Documentation updates

Fixes #353 (Phase 1)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-21 18:53:34 -05:00
..
doctor
Merge branch 'main' of https://github.com/steveyegge/beads
2025-11-20 19:37:01 -05:00
setup
feat: add context optimization features for AI agents (#297)
2025-11-12 10:48:36 -08:00
templates
chore: Bump version to 0.24.0
2025-11-20 22:15:04 -05:00
testdata
…
autoflush.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
autoimport_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
autoimport.go
…
autostart_test.go
…
clean.go
Add 'bd clean' command to remove temporary merge artifacts
2025-11-20 20:21:37 -05:00
cleanup.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
cli_fast_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
comments_test.go
test: Refactor P1 test files to use shared DB pattern (bd-1rh)
2025-11-21 15:51:07 -05:00
comments.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
compact_test.go
test: Refactor compact_test.go to use shared DB pattern (bd-1rh)
2025-11-21 16:13:18 -05:00
compact.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
config_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
config.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
create_test.go
test: Refactor P1 test files to use shared DB pattern (bd-1rh)
2025-11-21 15:51:07 -05:00
create.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
daemon_autoimport_test.go
…
daemon_autostart.go
Centralize BD_DEBUG logging into internal/debug package
2025-11-06 20:14:34 -08:00
daemon_config.go
Reorganize project structure: move Go files to internal/beads, docs to docs/
2025-11-05 21:04:00 -08:00
daemon_crash_test.go
bd-vcg5: Add daemon crash recovery with panic handler + socket cleanup
2025-11-07 21:17:24 -08:00
daemon_debouncer_test.go
…
daemon_debouncer.go
…
daemon_event_loop.go
Fix daemon orphaning: track parent PID and exit when parent dies
2025-11-07 18:57:43 -08:00
daemon_lifecycle.go
Add RPC diagnostics with BD_RPC_DEBUG env var
2025-11-07 21:29:22 -08:00
daemon_lock_test.go
…
daemon_lock_unix.go
…
daemon_lock_wasm.go
…
daemon_lock_windows.go
…
daemon_lock.go
Fix daemon orphaning: track parent PID and exit when parent dies
2025-11-07 18:57:43 -08:00
daemon_logger.go
…
daemon_parent_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
daemon_rotation_test.go
…
daemon_server.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
daemon_sync_branch_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
daemon_sync_branch.go
Remove legacy issues.jsonl and update defaults to beads.jsonl
2025-11-20 19:00:36 -05:00
daemon_sync_test.go
Close bd-ar2.8: Add edge case tests for export metadata updates
2025-11-21 14:57:01 -05:00
daemon_sync.go
Complete bd-ar2 P2 tasks: metadata, resurrection, and testing improvements
2025-11-21 11:40:37 -05:00
daemon_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
daemon_unix.go
…
daemon_wasm.go
…
daemon_watcher_platform_test.go
…
daemon_watcher_test.go
…
daemon_watcher.go
fix: address critical resource leaks and error handling issues (#327)
2025-11-20 08:13:06 -08:00
daemon_windows.go
…
daemon.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
daemons_test.go
…
daemons.go
fix: address critical resource leaks and error handling issues (#327)
2025-11-20 08:13:06 -08:00
delete_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
delete.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
deletion_tracking_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
deletion_tracking.go
Fix lint errors: handle error return values
2025-11-15 12:52:34 -08:00
dep_test.go
test: Refactor P1 test files to use shared DB pattern (bd-1rh)
2025-11-21 15:51:07 -05:00
dep.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
detect_pollution.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
direct_mode_test.go
…
direct_mode.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
doctor_test.go
Fix doctor incorrectly diagnosing hash IDs as sequential (issue #322)
2025-11-18 05:20:11 -05:00
doctor.go
Merge branch 'main' of https://github.com/steveyegge/beads
2025-11-20 19:37:01 -05:00
duplicates_test.go
feat: Add sandbox escape hatches for daemon lock issues (GH #353 Phase 1)
2025-11-21 18:53:34 -05:00
duplicates.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
epic_test.go
test: Refactor epic_test.go to use shared DB pattern (P2)
2025-11-21 16:14:30 -05:00
epic.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
export_import_test.go
…
export_integrity_integration_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
export_mtime_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
export_staleness_test.go
Fix bd-srwk: Add ID-based staleness detection to bd export
2025-11-07 20:07:59 -08:00
export_test.go
Fix context propagation lifecycle bugs
2025-11-20 21:54:11 -05:00
export.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
flags.go
Refactor: extract duplicated validation and flag logic (bd-g5p7)
2025-11-20 19:11:27 -05:00
flush_manager_test.go
Improve FlushManager: constants, error logging, and functional tests
2025-11-20 21:38:31 -05:00
flush_manager.go
Improve FlushManager: constants, error logging, and functional tests
2025-11-20 21:38:31 -05:00
git_sync_test.go
…
helpers_test.go
bd sync: 2025-11-09 14:53:59
2025-11-09 14:53:59 -08:00
hooks_test.go
Fix CI regressions and stabilize tests
2025-11-17 10:06:35 -07:00
hooks.go
Annotate gosec-safe file accesses
2025-11-17 10:12:46 -07:00
import_bug_test.go
…
import_cancellation_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
import_idempotent_test.go
…
import_mtime_test.go
fix: Fix daemon export leaving JSONL newer than database (issues #301, #321)
2025-11-19 05:06:12 -05:00
import_multipart_id_test.go
bd sync: 2025-11-09 14:53:59
2025-11-09 14:53:59 -08:00
import_profile_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
import_shared.go
Add --clear-duplicate-external-refs flag to bd import
2025-11-06 13:01:44 -08:00
import_uncommitted_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
import.go
feat: Add sandbox escape hatches for daemon lock issues (GH #353 Phase 1)
2025-11-21 18:53:34 -05:00
info_test.go
feat: Add bd info --whats-new for agent version awareness (bd-eiz9)
2025-11-08 02:28:54 -08:00
info.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
init_contributor.go
Annotate gosec-safe file accesses
2025-11-17 10:12:46 -07:00
init_hooks_test.go
Fix CI regressions and stabilize tests
2025-11-17 10:06:35 -07:00
init_team.go
…
init_test.go
bd sync: 2025-11-09 14:13:48
2025-11-09 14:13:48 -08:00
init.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
integrity_content_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
integrity_test.go
test: Refactor integrity_test.go to use shared DB pattern (bd-1rh P2)
2025-11-21 16:11:56 -05:00
integrity.go
Complete bd-ar2 P2 tasks: metadata, resurrection, and testing improvements
2025-11-21 11:40:37 -05:00
jsonl_integrity_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
label_test.go
…
label.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
list_test.go
test: Refactor P1 test files to use shared DB pattern (bd-1rh)
2025-11-21 15:51:07 -05:00
list.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
main_test.go
Fix bd-17d5: conflict marker false positives on JSON-encoded content
2025-11-08 13:09:42 -08:00
main.go
feat: Add sandbox escape hatches for daemon lock issues (GH #353 Phase 1)
2025-11-21 18:53:34 -05:00
markdown_test.go
…
markdown.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
merge.go
Add debug logging to bd merge for troubleshooting
2025-11-20 20:24:36 -05:00
message.go
Fix lint errors: handle error return values
2025-11-15 12:52:34 -08:00
migrate_hash_ids_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
migrate_hash_ids.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
migrate_issues.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
migrate_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
migrate.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
nodb_test.go
bd sync: 2025-11-09 14:53:59
2025-11-09 14:53:59 -08:00
nodb.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
onboard_test.go
Handle formatting errors in onboard renderer
2025-11-17 11:32:37 -07:00
onboard.go
Handle formatting errors in onboard renderer
2025-11-17 11:32:37 -07:00
output_test.go
…
prime.go
Annotate gosec-safe file accesses
2025-11-17 10:12:46 -07:00
quickstart.go
…
ready_test.go
test: Refactor P1 test files to use shared DB pattern (bd-1rh)
2025-11-21 15:51:07 -05:00
ready.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
reinit_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
rename_prefix_repair_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
rename_prefix_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
rename_prefix.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
reopen_test.go
…
reopen.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
repair_deps_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
repair_deps.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
repo.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
restore_test.go
…
restore.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
scripttest_test.go
…
search.go
feat: Add bd search command for efficient text queries (#347)
2025-11-20 22:44:19 -05:00
setup.go
feat: add context optimization features for AI agents (#297)
2025-11-12 10:48:36 -08:00
show.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
simple_helpers_test.go
…
snapshot_manager.go
Annotate gosec-safe file accesses
2025-11-17 10:12:46 -07:00
stale_test.go
test: Refactor P1 test files to use shared DB pattern (bd-1rh)
2025-11-21 15:51:07 -05:00
stale.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
staleness.go
feat: Add sandbox escape hatches for daemon lock issues (GH #353 Phase 1)
2025-11-21 18:53:34 -05:00
status_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
status.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
sync_local_only_test.go
test: Tag 16 slow integration tests with build tags
2025-11-21 14:40:22 -05:00
sync_merge_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
sync_test.go
…
sync.go
Fix bd-ar2 code review issues: metadata tracking and multi-repo support
2025-11-21 11:28:25 -05:00
template_security_test.go
…
template_test.go
…
template.go
…
test_helpers_test.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
TEST_SUITE_AUDIT.md
test: Refactor compact_test.go to use shared DB pattern (bd-1rh)
2025-11-21 16:13:18 -05:00
test_wait_helper.go
…
validate_test.go
test: Refactor validate_test.go - remove ALL DB setup (P2)
2025-11-21 16:14:30 -05:00
validate.go
Context propagation with graceful cancellation (bd-rtp, bd-yb8, bd-2o2)
2025-11-20 21:57:23 -05:00
version_test.go
…
version.go
chore: Bump version to 0.24.0
2025-11-20 22:15:04 -05:00
worktree_test.go
Improve cmd/bd test coverage from 20.2% to 23.3%
2025-11-08 18:22:28 -08:00
worktree.go
Reorganize project structure: move Go files to internal/beads, docs to docs/
2025-11-05 21:04:00 -08:00