bd sync: 2025-12-22 02:13:56
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Steve Yegge
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{"id":"gt-3x0z.6","title":"Phase 2.3: Polecat CLAUDE.md molecule workflow protocol","description":"Update polecat prompting for molecule-based work.\n\n## CLAUDE.md Updates\n\nAdd section on molecule workflow:\n\n```markdown\n## Molecule Workflow\n\nWhen assigned a molecule (check gt prime output):\n\n1. Follow molecule steps in order\n2. Mark steps complete: bd mol step complete \u003cstep-id\u003e\n3. Before signaling done:\n a. Generate summary of work performed\n b. Run: bd squash \u003cmolecule-root\u003e --summary \"\u003cyour summary\u003e\"\n4. Then signal done as normal\n\n### Summary Guidelines\n\nYour summary should include:\n- What was the task?\n- What did you do?\n- What was the outcome?\n- Any issues or follow-ups?\n\nKeep it to 2-4 sentences. This becomes the permanent record.\n```","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/rictus","created_at":"2025-12-21T14:33:45.24122-08:00","updated_at":"2025-12-21T16:30:46.776078-08:00","closed_at":"2025-12-21T16:30:46.776078-08:00","close_reason":"Added molecule workflow section to polecat.md.tmpl with step-by-step protocol and summary guidelines","dependencies":[{"issue_id":"gt-3x0z.6","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:33:45.241575-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.6","depends_on_id":"gt-3x0z.4","type":"blocks","created_at":"2025-12-21T15:22:47.355729-08:00","created_by":"daemon"}]}
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{"id":"gt-3x0z.7","title":"Phase 3.1: Summary generation protocol","description":"Define how agents generate summaries for squash.\n\n## The Problem\n\nBeads doesn't make AI calls (inversion of control). Gas Town agents must:\n1. Generate their own summary before calling squash\n2. Pass summary to bd squash command\n\n## Summary Template\n\n```\nTask: \u003csource issue title\u003e\nAction: \u003cwhat was done - fix/implement/refactor/etc\u003e\nOutcome: \u003cresult - tests pass, committed, needs follow-up, etc\u003e\nDetails: \u003c1-2 sentences of specifics if needed\u003e\n```\n\n## Example\n\n```\nTask: Fix lifecycle parser matching bug (gt-rixa)\nAction: Reordered conditional checks in parseLifecycleRequest\nOutcome: Tests passing, committed to polecat/furiosa\nDetails: The 'cycle' keyword was matching 'lifecycle:' prefix. Now checks restart/shutdown first, uses word boundary for cycle.\n```\n\n## Command\n\n```bash\nbd squash eph-abc123 --summary \"Task: Fix lifecycle parser...\"\n```","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/furiosa","created_at":"2025-12-21T14:34:12.86627-08:00","updated_at":"2025-12-21T18:20:28.310235-08:00","closed_at":"2025-12-21T18:20:28.310235-08:00","close_reason":"Added summary generation protocol to polecat.md.tmpl with Task/Action/Outcome/Details template and guidelines","dependencies":[{"issue_id":"gt-3x0z.7","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:12.868178-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.7","depends_on_id":"gt-3x0z.6","type":"blocks","created_at":"2025-12-21T14:34:40.530235-08:00","created_by":"daemon"}]}
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{"id":"gt-3x0z.8","title":"Phase 3.2: mol-polecat-work squash step","description":"Add summary+squash as final steps in mol-polecat-work.\n\n## Current Steps\n\n1. read-assignment\n2. understand-task\n3. implement-solution\n4. verify-tests\n5. commit-work\n6. signal-done\n\n## Updated Steps\n\n1. read-assignment\n2. understand-task\n3. implement-solution\n4. verify-tests\n5. commit-work\n6. **generate-summary** ← NEW\n7. **squash-molecule** ← NEW\n8. signal-done\n\n## Step Definitions\n\n### generate-summary\nAgent writes a concise summary following the template.\nSave to a local variable or temp file.\n\n### squash-molecule\nRun: bd squash $MOLECULE_ROOT --summary \"$SUMMARY\"\nThis creates digest in main beads, cleans ephemeral.\n\n## Update Location\n\nThis requires updating the mol-polecat-work definition in beads molecule catalog.","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/furiosa","created_at":"2025-12-21T14:34:12.946518-08:00","updated_at":"2025-12-21T18:32:00.025061-08:00","closed_at":"2025-12-21T18:32:00.025061-08:00","close_reason":"Added generate-summary and squash-molecule steps to mol-polecat-work molecule with updated dependency chain","dependencies":[{"issue_id":"gt-3x0z.8","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:12.946899-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.8","depends_on_id":"gt-3x0z.7","type":"blocks","created_at":"2025-12-21T14:34:40.601367-08:00","created_by":"daemon"}]}
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{"id":"gt-3x0z.9","title":"Phase 4.1: mol-deacon-patrol uses ephemeral","description":"Deacon patrol cycles run as ephemeral molecules.\n\n## Current Deacon Loop\n\n```\nwhile running:\n check_heartbeat()\n check_mail()\n sleep(interval)\n```\n\n## Molecule-Based Loop\n\n```\nwhile running:\n mol = bd mol bond mol-deacon-patrol-cycle --ephemeral\n execute_cycle(mol):\n check_heartbeat()\n check_mail()\n log_status()\n summary = generate_cycle_summary()\n bd squash mol --summary summary\n sleep(interval)\n```\n\n## Benefits\n\n- Each cycle is tracked\n- Digests show daemon health over time\n- Can query: 'show me patrol cycles from last hour'\n- Crash mid-cycle → ephemeral shows where we were","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T14:34:13.026048-08:00","updated_at":"2025-12-22T02:10:56.976291-08:00","closed_at":"2025-12-22T02:10:56.976291-08:00","close_reason":"Implemented deacon patrol using wisps: spawn creates Wisp:true issues, squash deletes wisp children and creates digest, patrol status detection updated to check for open children","dependencies":[{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:13.026388-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z.8","type":"blocks","created_at":"2025-12-21T14:34:40.672531-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-rana.3","type":"blocks","created_at":"2025-12-21T15:20:27.460976-08:00","created_by":"daemon"}]}
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{"id":"gt-3x0z.9","title":"Phase 4.1: mol-deacon-patrol uses ephemeral","description":"Deacon patrol cycles run as ephemeral molecules.\n\n## Current Deacon Loop\n\n```\nwhile running:\n check_heartbeat()\n check_mail()\n sleep(interval)\n```\n\n## Molecule-Based Loop\n\n```\nwhile running:\n mol = bd mol bond mol-deacon-patrol-cycle --ephemeral\n execute_cycle(mol):\n check_heartbeat()\n check_mail()\n log_status()\n summary = generate_cycle_summary()\n bd squash mol --summary summary\n sleep(interval)\n```\n\n## Benefits\n\n- Each cycle is tracked\n- Digests show daemon health over time\n- Can query: 'show me patrol cycles from last hour'\n- Crash mid-cycle → ephemeral shows where we were","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T14:34:13.026048-08:00","updated_at":"2025-12-22T02:13:49.561833-08:00","closed_at":"2025-12-22T02:13:49.561833-08:00","close_reason":"Implemented wisp-based patrol for Deacon. Removed daemon attachment logic, updated deacon template. Commit ae513a5.","dependencies":[{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:13.026388-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z.8","type":"blocks","created_at":"2025-12-21T14:34:40.672531-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-rana.3","type":"blocks","created_at":"2025-12-21T15:20:27.460976-08:00","created_by":"daemon"}]}
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{"id":"gt-3x1","title":"Update Refinery to use Beads merge queue","description":"Replace branch discovery with Beads queue in the Refinery module:\n\nCurrent (internal/refinery/manager.go):\n- Scans for polecat/* branches\n- Creates MR objects on-the-fly\n\nNew:\n- Pull from Beads: bd ready --type=merge-request\n- Process each MR\n- Close with merge commit: bd close \u003cid\u003e --reason=\"Merged at \u003csha\u003e\"\n- Handle failures: bd update \u003cid\u003e --status=blocked --reason=\"...\"\n\nThe Engineer (agent) becomes Beads-native.\nThe Refinery (module) provides the infrastructure.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-16T23:02:37.96436-08:00","updated_at":"2025-12-19T15:24:39.1231-08:00","closed_at":"2025-12-19T14:47:51.65991-08:00","dependencies":[{"issue_id":"gt-3x1","depends_on_id":"gt-h5n","type":"blocks","created_at":"2025-12-16T23:02:55.812433-08:00","created_by":"daemon"},{"issue_id":"gt-3x1","depends_on_id":"gt-svi","type":"blocks","created_at":"2025-12-16T23:03:12.814463-08:00","created_by":"daemon"}]}
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{"id":"gt-3x1.1","title":"Engineer main loop: poll for ready merge-requests","description":"Implement the Engineer's main processing loop.\n\nLoop structure:\n1. Query: bd ready --type=merge-request\n2. If empty: sleep(poll_interval), continue\n3. Select highest priority, oldest MR\n4. Claim: bd update \u003cid\u003e --status=in_progress\n5. Process (delegate to other subtasks)\n6. Repeat\n\nConfiguration:\n- poll_interval: from rig config (default 30s)\n- max_concurrent: from rig config (default 1)\n\nThe loop should be interruptible and handle graceful shutdown.\n\nReference: docs/merge-queue-design.md#engineer-processing-loop","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T13:50:57.022367-08:00","updated_at":"2025-12-18T20:45:17.731441-08:00","closed_at":"2025-12-18T20:14:35.321731-08:00","dependencies":[{"issue_id":"gt-3x1.1","depends_on_id":"gt-3x1","type":"parent-child","created_at":"2025-12-17T13:50:57.024225-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.1","depends_on_id":"gt-svi.1","type":"blocks","created_at":"2025-12-17T13:53:09.832586-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.1","depends_on_id":"gt-svi.2","type":"blocks","created_at":"2025-12-17T13:53:09.9547-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.1","depends_on_id":"gt-h5n.8","type":"blocks","created_at":"2025-12-17T13:53:16.770078-08:00","created_by":"daemon"}]}
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{"id":"gt-3x1.2","title":"Fetch and conflict check: git operations for MR","description":"Implement git operations for MR processing.\n\nSteps:\n1. git fetch origin \u003cmr.branch\u003e\n2. git checkout \u003cmr.target\u003e (main or integration/xxx)\n3. git merge --no-commit --no-ff \u003cmr.branch\u003e (test merge)\n4. Check for conflicts\n5. If conflicts: abort and return Failure(conflict, files)\n6. If clean: abort (actual merge in next step)\n\nHelper functions:\n- FetchBranch(branch string) error\n- CheckConflicts(source, target string) ([]string, error)\n\nReference: docs/merge-queue-design.md#process-merge-steps","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T13:50:58.99193-08:00","updated_at":"2025-12-18T20:17:47.781432-08:00","closed_at":"2025-12-18T20:17:47.781432-08:00","dependencies":[{"issue_id":"gt-3x1.2","depends_on_id":"gt-3x1","type":"parent-child","created_at":"2025-12-17T13:50:58.993973-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.2","depends_on_id":"gt-3x1.1","type":"blocks","created_at":"2025-12-17T13:53:10.066159-08:00","created_by":"daemon"}]}
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@@ -139,6 +139,7 @@
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{"id":"gt-72so","title":"gt mq list: doesn't show submitted MRs","description":"After submitting MRs with gt mq submit, gt mq list gastown shows empty queue.\n\n## Reproduction\n1. gt mq submit --issue gt-h5n.5 --branch polecat/Scabrous\n2. gt mq list gastown → (empty)\n3. bd list --type=merge-request → shows the MR\n\n## Expected\ngt mq list should show submitted MRs\n\n## MR example\ngt-ts4u has rig: gastown in description, type=merge-request, status=open","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-19T14:54:26.731813-08:00","updated_at":"2025-12-19T17:22:52.552662-08:00","closed_at":"2025-12-19T16:19:53.82455-08:00"}
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{"id":"gt-7918","title":"Patrols: Cyclic molecules for autonomous maintenance","description":"## Vision\n\nPatrols are **cyclic molecules** - workflow loops that give Gas Town its autonomous nervous system. While regular molecules are DAGs that terminate, patrols loop forever, performing maintenance tasks at varying cadences.\n\nThis is the \"steam engine\" of Gas Town: converting episodic Claude sessions into continuous autonomous operation.\n\n## Core Concepts\n\n### 1. Cyclic Molecules\n\nRegular molecule: A -\u003e B -\u003e C -\u003e done\nPatrol molecule: A -\u003e B -\u003e C --+\n ^ |\n +-------------+\n\nPatrols have a loop_to field specifying where to restart.\n\n### 2. Cooldown-Aware Steps (Atoms)\n\nSteps encode their own cadence. When patrol reaches a step:\n1. Check: now - last_run \u003e cooldown?\n2. If yes: execute, update last_run\n3. If no: skip (immediately close)\n\nThe patrol runner is simple - steps self-skip. Complexity distributed into atoms.\n\n### 3. The Beacon\n\nThe heartbeat that fires patrol triggers:\n- Internal ticker in Deacon (goroutine)\n- Or external cron firing gt deacon tick\n- Or mail-based triggers\n\nWithout beacon, nothing proactive happens.\n\n### 4. Session Reset as Patrol Step\n\nConnects to auto-handoff (gt-bcwn). Session reset is a patrol step, not a separate mechanism.\n\n### 5. Multi-Role Patrols\n\nEach supervisor has its own patrol:\n\n**Deacon patrol:** health-check (30s), session-gc (5m), beacon-tick (10s)\n**Witness patrol:** orphan-scan (10m), stuck-check (2m), molecule-progress (1m)\n**Refinery patrol:** queue-check (30s), pr-status (1m), merge-ready (30s)\n\n### 6. Cadence Tiers\n\n- Critical (10-30s): Health checks\n- Active (1-5m): Progress, nudges\n- Maintenance (10-30m): Orphans, GC\n- Periodic (1h+): Reports\n\n### 7. Best-Effort Scheduling\n\nNot real-time - more like cron. No hard deadlines. Catch-up, dont pile-up.\nPriority preemption (mail interrupts patrol). Graceful degradation under load.\n\n## Open Questions\n\n1. State persistence: Beads (self-describing) or file (faster)?\n2. Interruption: How does urgent mail preempt patrol?\n3. Error recovery: Backoff? Escalate? Circuit breaker?\n4. Coordination: Can patrols send mail to trigger other patrols?\n\n## Related\n\n- gt-bcwn: Auto-handoff (session reset is a patrol step)\n- Molecule system (patrols extend molecules with loops)\n- Deacon lifecycle management\n\n## Metaphor\n\nClaude was fire. Claude Code was steam. Gas Town is the steam engine. Beads is the train tracks.\n\nThe steam engine converts episodic combustion into continuous rotary motion.\nGas Town converts episodic Claude sessions into continuous autonomous work.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-21T12:18:22.99128-08:00","updated_at":"2025-12-21T12:18:22.99128-08:00","dependencies":[{"issue_id":"gt-7918","depends_on_id":"gt-bcwn","type":"blocks","created_at":"2025-12-21T12:18:30.86651-08:00","created_by":"daemon"}]}
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{"id":"gt-7hz3","title":"Merge: gt-92l","description":"branch: polecat/Ace\ntarget: main\nsource_issue: gt-92l\nrig: gastown","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T16:31:37.716367-08:00","updated_at":"2025-12-19T18:26:14.102101-08:00","closed_at":"2025-12-19T17:48:09.627376-08:00"}
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{"id":"gt-7iek","title":"context-check","description":"Assess own context usage. If high, prepare for handoff.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T17:51:45.43771-08:00","updated_at":"2025-12-21T17:51:45.43771-08:00","dependencies":[{"issue_id":"gt-7iek","depends_on_id":"gt-hbnz","type":"parent-child","created_at":"2025-12-21T17:51:45.442974-08:00","created_by":"stevey"}],"wisp":true}
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{"id":"gt-7ik","title":"Ephemeral polecats: spawn fresh, delete on completion","description":"## Design Decision\n\nSwitch from pooled/idle polecats to ephemeral model:\n- Spawn creates fresh worktree from main\n- Polecat requests shutdown when done (bottom-up)\n- Witness verifies handoff, kills session, deletes worktree\n- No 'idle' state - polecats exist only while working\n\n## Rationale\n\n1. **Git worktrees are fast** - pooling optimization is obsolete\n2. **Pooling creates maintenance burden:**\n - Git stashes accumulate\n - Untracked artifacts pile up\n - Branches drift from main\n - Beads DB gets stale\n3. **PGT sync problems** came from persistent branches\n4. **Support infrastructure exists** - Witness, Refinery, Mayor handle continuity\n5. **Simpler mental model** - polecat exists = work in progress\n\n## Lifecycle\n\n```\nSpawn:\n gt spawn --issue \u003cid\u003e\n → Creates fresh worktree: git worktree add polecats/\u003cname\u003e -b polecat/\u003cname\u003e\n → Initializes beads in worktree\n → Starts session, assigns work\n\nWorking:\n Polecat does task\n → Pushes to polecat/\u003cname\u003e branch\n → Submits to merge queue when ready\n\nCompletion (POLECAT-INITIATED):\n Polecat runs: gt handoff\n → Verifies git state clean\n → Sends mail to Witness: \"Ready for shutdown\"\n → Marks itself done, waits for termination\n\nCleanup (WITNESS-OWNED):\n Witness receives shutdown request\n → Verifies PR merged or in queue\n → Verifies no uncommitted changes\n → Kills session: gt session stop \u003crig\u003e/\u003cpolecat\u003e\n → Deletes worktree: git worktree remove polecats/\u003cname\u003e\n → Deletes branch: git branch -d polecat/\u003cname\u003e\n → Optionally: Notifies Mayor of completion\n```\n\n## Key Insight: Bottom-Up Shutdown\n\n**Old model (wrong)**: Top-down batch shutdown - \"cancel the swarm\"\n**New model (right)**: Bottom-up individual shutdown - polecat requests, Witness executes\n\nThis enables streaming:\n- Workers come and go continuously\n- No \"swarm end\" to trigger cleanup\n- Each worker manages its own lifecycle\n- Witness is the lifecycle authority\n\n## Implementation\n\n1. Add `gt handoff` command for polecats to request shutdown\n2. Modify gt spawn to always create fresh worktree\n3. Run bd init in new worktree (beads needs initialization)\n4. Add shutdown request handler to Witness\n5. Witness verifies handoff, then cleans up:\n - Kill session\n - Remove worktree\n - Delete branch\n6. Remove 'idle' state from polecat state machine\n7. Simplify gt polecat list (only shows active)\n\n## Impact on Other Tasks\n\n- gt-17r (Zombie cleanup): Becomes trivial - orphan worktrees\n- gt-4my (Worker health): Simpler - no idle/stuck ambiguity\n- gt-f9x.5/f9x.6 (Doctor): Fewer states to validate\n- gt-eu9 (Witness handoff): Witness receives polecat shutdown requests","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-17T15:44:31.139964-08:00","updated_at":"2025-12-19T01:57:17.033547-08:00","closed_at":"2025-12-19T01:57:17.033547-08:00"}
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{"id":"gt-7lt","title":"gt mail send should tmux-notify recipient","description":"## Problem\n\nWhen mail is sent via gt mail send, the recipient session does not get a tmux notification. In Python Gas Town (PGT), mail delivery triggers a tmux display-message or similar notification so the agent knows mail arrived.\n\n## Expected Behavior\n\nWhen gt mail send \u003caddr\u003e is called:\n1. Mail is delivered to recipient inbox\n2. If recipient has an active tmux session, send notification\n3. Notification should be visible (display-message or bell)\n\n## Current Behavior\n\nMail is delivered but no notification. Agent has to poll inbox to discover new mail.\n\n## Impact\n\n- Agents miss time-sensitive messages\n- Heartbeat pokes from daemon will not wake agents\n- Coordination is slower (polling vs push)\n\n## Implementation Notes\n\nAfter successful mail delivery, check if recipient has active session:\n- gt session list can identify active sessions\n- tmux display-message or send-keys can notify\n- Could inject a visible prompt like \"[MAIL] New message from \u003csender\u003e\"\n\n## Reference\n\nCheck PGT implementation for how it handles this.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-18T12:28:50.142075-08:00","updated_at":"2025-12-18T20:09:53.112902-08:00","closed_at":"2025-12-18T20:09:53.112902-08:00"}
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{"id":"gt-7o7","title":"Session pre-shutdown checks","description":"Session stop should verify clean state before killing, like PGT.\n\n## Pre-Shutdown Checks\n\n### 1. Git Working Tree Clean\n```go\nfunc checkGitClean(clonePath string) error {\n // git status --porcelain\n // Fail if any output\n}\n```\n\n### 2. All Commits Pushed\n```go\nfunc checkCommitsPushed(clonePath string) error {\n // git log origin/HEAD..HEAD\n // Fail if any unpushed commits\n}\n```\n\n### 3. Assigned Issues Handled\n```go\nfunc checkIssuesHandled(polecat *Polecat) error {\n // If polecat.Issue != \"\", check if closed or reassigned\n}\n```\n\n### 4. Beads Synced\n```go\nfunc checkBeadsSynced(clonePath string) error {\n // bd sync --status in clone directory\n}\n```\n\n## Behavior on Failure\n1. First attempt: Nudge worker to fix\n2. Retry up to 3 times with delay\n3. After retries: Escalate to Witness/Mayor\n\n## Integration\nModify internal/session/manager.go Stop():\n```go\nfunc (m *Manager) Stop(polecat string, force bool) error {\n if !force {\n if err := m.runPreShutdownChecks(polecat); err != nil {\n return fmt.Errorf(\"pre-shutdown checks failed: %w\", err)\n }\n }\n // existing stop logic\n}\n```\n\n## Flags\n- --force: Skip checks\n- --grace-period N: Time to wait for fixes\n\n## Dependencies\n- Ties into gt-69l (hook system) - can be hook-based\n- Ties into gt-f8v (Witness pre-kill verification)\n\n## Acceptance Criteria\n- [ ] Stop fails if uncommitted changes (without --force)\n- [ ] Stop fails if unpushed commits\n- [ ] Clear error messages with fix instructions\n- [ ] --force bypasses all checks","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T14:47:55.968983-08:00","updated_at":"2025-12-16T16:05:02.795812-08:00"}
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@@ -200,6 +201,7 @@
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{"id":"gt-a817","title":"Update polecat CLAUDE.md with molecule workflow","description":"Add molecule execution guidance to polecat context:\n\n## What to Add\n\n### Molecule Awareness\n- Polecats execute Wisps (ephemeral molecule instances)\n- The work assignment mail includes molecule context\n- Current step is tracked in the wisp\n\n### Workflow Protocol\n1. Read assignment (includes molecule ID and current step)\n2. Execute current step\n3. Update step status via bd mol step\n4. Generate summary when all steps complete\n5. Run bd mol squash to compress wisp into digest\n\n### Key Commands\n- bd mol show \u003cwisp-id\u003e - view current molecule state\n- bd mol step \u003cwisp-id\u003e --status=complete - mark step done\n- bd mol squash \u003cwisp-id\u003e --summary='...' - complete molecule\n\n### Summary Generation\nWhen completing work, generate a summary that:\n- Lists what was accomplished\n- Notes any deviations from the plan\n- Captures key decisions made\n- This becomes the permanent digest","status":"closed","priority":2,"issue_type":"task","assignee":"gastown/furiosa","created_at":"2025-12-21T16:33:05.36066-08:00","updated_at":"2025-12-21T16:42:47.779155-08:00","closed_at":"2025-12-21T16:42:47.779155-08:00","close_reason":"Added molecule workflow section to polecat.md with phases, workflow protocol, commands, and summary generation guidance","dependencies":[{"issue_id":"gt-a817","depends_on_id":"gt-62hm","type":"blocks","created_at":"2025-12-21T16:33:17.457167-08:00","created_by":"daemon"}]}
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{"id":"gt-a95","title":"Refinery background daemon mode","description":"Refinery currently only works in foreground mode. Background daemon is stubbed.\n\n## Current State\nmanager.go line 128-129:\n```go\n// Background mode: spawn a new process\n// For MVP, we just mark as running - actual daemon implementation in gt-ov2\nreturn nil\n```\n\n## Requirements\n\n### 1. Background Process Spawning\n```go\nfunc (m *Manager) Start(foreground bool) error {\n if !foreground {\n // Spawn gt refinery start --foreground as subprocess\n cmd := exec.Command(os.Args[0], \"refinery\", \"start\", m.rig.Name, \"--foreground\")\n cmd.Start() // Don't wait\n // Record PID\n }\n}\n```\n\n### 2. PID File Management\n- Write PID to .gastown/refinery.pid\n- Check PID validity on status\n- Clean up stale PID files\n\n### 3. Log Output\n- Redirect stdout/stderr to .gastown/refinery.log\n- Log rotation (optional for MVP)\n\n### 4. Graceful Shutdown\n- Handle SIGTERM/SIGINT\n- Complete current merge before exit\n- Update state to stopped\n\n### 5. Health Check\n- Process existence check via kill -0\n- Optional: heartbeat file with timestamp\n\n## Files to Modify\n- internal/refinery/manager.go: Start(), Status(), process spawning\n\n## Acceptance Criteria\n- [ ] gt refinery start \u003crig\u003e spawns background process\n- [ ] gt refinery status shows running with PID\n- [ ] gt refinery stop sends SIGTERM and waits\n- [ ] Logs written to .gastown/refinery.log\n- [ ] Survives terminal close","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-16T14:46:53.366619-08:00","updated_at":"2025-12-19T15:24:39.124789-08:00","closed_at":"2025-12-19T14:47:40.165105-08:00"}
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{"id":"gt-a9y","title":"File locking for concurrent access","description":"Add file locking for concurrent access safety.\n\n## At-Risk Files\n- .gastown/swarms.json (or per-swarm state.json)\n- .gastown/refinery.json\n- polecats/\u003cname\u003e/state.json\n- inbox.jsonl files\n\n## Go File Locking\nUse syscall.Flock for advisory locking:\n```go\ntype FileLock struct {\n file *os.File\n}\n\nfunc AcquireLock(path string, timeout time.Duration) (*FileLock, error) {\n f, err := os.OpenFile(path+\".lock\", os.O_CREATE|os.O_RDWR, 0644)\n if err != nil {\n return nil, err\n }\n // Use syscall.Flock with timeout\n}\n\nfunc (l *FileLock) Release() error\n```\n\n## Integration Pattern\n```go\nfunc (m *Manager) saveState(ref *Refinery) error {\n lock, err := AcquireLock(m.stateFile(), 5*time.Second)\n if err != nil {\n return fmt.Errorf(\"could not acquire lock: %w\", err)\n }\n defer lock.Release()\n \n // Read-modify-write cycle\n}\n```\n\n## New Package\ninternal/filelock/\n├── lock.go # FileLock, AcquireLock\n└── lock_test.go\n\n## Apply To\n- internal/refinery/manager.go: loadState/saveState\n- internal/cmd/swarm.go: SwarmStore\n- internal/mail/mailbox.go: Append, rewrite\n- internal/polecat/manager.go: state operations\n\n## Timeout Handling\nDefault 5 second timeout. Return error if lock not acquired.\n\n## Acceptance Criteria\n- [ ] Lock files created (.lock extension)\n- [ ] Timeout on lock contention\n- [ ] All state files protected\n- [ ] Locks released on error paths","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T14:48:15.641938-08:00","updated_at":"2025-12-16T16:06:32.441426-08:00"}
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{"id":"gt-ac5v","title":"health-scan","description":"Ping Witnesses and Refineries. Run gt status --health. Remediate if down.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T17:51:45.436913-08:00","updated_at":"2025-12-21T17:51:45.436913-08:00","dependencies":[{"issue_id":"gt-ac5v","depends_on_id":"gt-hbnz","type":"parent-child","created_at":"2025-12-21T17:51:45.438923-08:00","created_by":"stevey"},{"issue_id":"gt-ac5v","depends_on_id":"gt-v2ed","type":"blocks","created_at":"2025-12-21T17:51:45.439452-08:00","created_by":"stevey"}],"wisp":true}
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{"id":"gt-adc9","title":"implement","description":"Implement the solution for gt-qwyu. Follow codebase conventions.\nFile discovered work as new issues with bd create.\n\nMake regular commits with clear messages.\nKeep changes focused on the assigned issue.\n\nDepends: load-context","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T21:58:52.599953-08:00","updated_at":"2025-12-21T21:59:10.939807-08:00","closed_at":"2025-12-21T21:59:10.939807-08:00","close_reason":"test cleanup","dependencies":[{"issue_id":"gt-adc9","depends_on_id":"gt-q6hl","type":"parent-child","created_at":"2025-12-21T21:58:52.601414-08:00","created_by":"stevey"},{"issue_id":"gt-adc9","depends_on_id":"gt-leeb","type":"blocks","created_at":"2025-12-21T21:58:52.601977-08:00","created_by":"stevey"}],"wisp":true}
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{"id":"gt-ai1z","title":"TODO: Detect cycles in molecule dependency graph","description":"molecule.go:302 has a TODO to detect cycles in the dependency graph. Currently, cyclical dependencies could cause issues.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T21:34:28.169096-08:00","updated_at":"2025-12-21T21:48:55.388426-08:00","closed_at":"2025-12-21T21:48:55.388426-08:00","close_reason":"Implemented DFS-based cycle detection in molecule dependency graph with 4 new tests"}
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{"id":"gt-alx","title":"Swarm: ephemeral rig support","description":"PGT has ephemeral rigs for swarms - temporary worker groups that are destroyed after landing.\n\nMissing Features:\n- gt swarm init [--rig \u003cname\u003e|--git-url \u003curl\u003e] [--num-workers N]\n- gt swarm worker add/remove/list \u003crig-id\u003e\n- gt swarm rigs - List ephemeral rigs\n- gt swarm destroy \u003crig-id\u003e - Destroy ephemeral rig\n\nDirectory structure:\n\u003cworkspace\u003e/mayor/workers/\u003crig-id\u003e/\n├── rig.json (metadata)\n├── alice/ (git clone)\n├── bob/\n└── carol/\n\nPGT Reference: gastown-py/src/gastown/ephemeral.py\n\nNote: Beads issue gt-kmn.12 mentions this but implementation is missing.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-16T14:47:14.302762-08:00","updated_at":"2025-12-16T16:03:47.902849-08:00","closed_at":"2025-12-16T16:03:47.902849-08:00"}
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