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@@ -380,7 +380,7 @@
{"id":"gt-8tmz.36","title":"Validate expanded step IDs are unique","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-25T11:50:48.436691-08:00","updated_at":"2025-12-25T11:50:48.436691-08:00","dependencies":[{"issue_id":"gt-8tmz.36","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-25T11:50:48.437167-08:00","created_by":"daemon"}]}
{"id":"gt-8tmz.37","title":"Support nested expansion formulas","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-25T11:50:48.751806-08:00","updated_at":"2025-12-25T11:50:48.751806-08:00","dependencies":[{"issue_id":"gt-8tmz.37","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-25T11:50:48.75222-08:00","created_by":"daemon"}]}
{"id":"gt-8tmz.38","title":"Fanout gate: waits-for children aggregation","description":"Formalize the fanout gate pattern where a step waits for all dynamically-bonded children.\n\n## Current State\n\nFormulas already use this pattern informally:\n\n step: aggregate\n waits_for: \"all-children\"\n\nBut it is not in the algebra spec or implemented in the cooker.\n\n## Proposed Syntax\n\n step: aggregate\n needs: [survey-workers]\n waits-for: children-of(survey-workers)\n\nOr simpler:\n\n step: aggregate\n needs: [survey-workers]\n waits-for: all-children\n\n## Semantics\n\n- Step cannot start until ALL children of the referenced step have completed\n- Children are dynamically bonded via for-each (gt-8tmz.8)\n- This is the \"aggregation\" half of the Christmas Ornament pattern\n- If no children were bonded, the gate passes immediately\n\n## Use Cases\n\n**Witness Patrol:**\n- survey-workers bonds N polecat-arms\n- aggregate waits for all arms to complete\n- Then proceeds to save-state\n\n**Refinery Patrol:**\n- Less common (sequential processing), but useful for parallel test runs\n\n## Relationship to gate\n\nThis is a variant of gate where the condition is \"all children complete\" rather than\nan arbitrary expression. Could be implemented as:\n\n gate:\n condition: \"children-of(survey-workers).all(status == complete)\"\n\nBut dedicated syntax is cleaner for this common pattern.\n\n## Dependencies\n\n- Depends on gt-8tmz.8 (for-each creates the children)\n- Depends on gt-8tmz.4 (gate infrastructure)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-25T14:19:04.255758-08:00","updated_at":"2025-12-25T14:19:04.255758-08:00","dependencies":[{"issue_id":"gt-8tmz.38","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-25T14:19:04.256284-08:00","created_by":"daemon"},{"issue_id":"gt-8tmz.38","depends_on_id":"gt-8tmz.8","type":"blocks","created_at":"2025-12-25T14:19:11.036957-08:00","created_by":"daemon"},{"issue_id":"gt-8tmz.38","depends_on_id":"gt-8tmz.4","type":"blocks","created_at":"2025-12-25T14:19:11.148842-08:00","created_by":"daemon"}]}
{"id":"gt-8tmz.4","title":"Control flow: loop, gate, branch","description":"Implement control flow operators for the molecule algebra.\n\n## Core Operators\n\n| Operator | Syntax | Purpose |\n|----------|--------|---------|\n| loop (fixed) | loop: { count: N, body: [steps] } | Fixed iteration |\n| loop (conditional) | loop: { until: COND, max: N, body: [steps] } | Bounded conditional iteration |\n| gate | gate: { before: step, condition: COND } | Wait for condition before proceeding |\n| branch | branch: { from: step, steps: [a,b,c], join: step } | Parallel paths that rejoin |\n\nConditions evaluated mechanically (step status, output fields) per gt-8tmz.7.\n\n## Design Review (2025-12-25)\n\nAnalyzed patrol patterns (witness, deacon, refinery) to verify these constructs\ncan express real Gas Town workflows. Key findings:\n\n### Insight: Patrol Loop is OUTSIDE the Algebra\n\nThe daemon respawns patrols. Each formula describes ONE cycle. This means:\n- Formulas don't need \"infinite loop with burn-and-respawn\"\n- loop is only for **inner loops** (refinery's per-branch processing)\n- \"burn-or-loop\" = complete cycle; daemon decides next action\n- Context cycling is external, not algebraic\n\nThis significantly simplifies the algebra.\n\n### Gap: for-each is Missing\n\nThe current proposal doesn't include for-each, but it's essential for patrol patterns:\n\n| Pattern | Use Case |\n|---------|----------|\n| Witness survey-workers | For each polecat, bond an arm (parallel) |\n| Refinery process-branch | For each branch in queue, run merge pipeline (sequential) |\n| Deacon plugin-run | For each plugin where gate open, execute |\n\nProposed syntax:\n\n for-each:\n collection: \"survey-workers.output.polecats\"\n bond: mol-polecat-arm\n vars:\n polecat_name: \"{item.name}\"\n parallel: true\n\nThis overlaps with gt-8tmz.8 (runtime dynamic expansion). Decision needed:\n- Include for-each here as control flow, OR\n- Ensure gt-8tmz.8 covers these patterns adequately\n\n### Gap: waits-for Gate Variant\n\nThe \"fanout gate\" pattern (aggregate waits for all dynamically-bonded children)\nneeds formalization:\n\n step: aggregate\n waits-for: children-of(survey-workers)\n\nCurrently exists in formulas as waits_for: \"all-children\" but not in the algebra spec.\n\n### What This Covers\n\nWith these operators (plus for-each), patrols become fully expressible:\n\n**Witness Patrol:**\n- for-each polecat -\u003e bond mol-polecat-arm (parallel)\n- gate with waits-for: all-children for aggregation\n\n**Refinery Patrol:**\n- for-each branch -\u003e process pipeline (sequential)\n- gate for test verification before merge\n\n**Deacon Patrol:**\n- for-each plugin -\u003e execute if gate open\n- Simple sequence otherwise\n\n### Scope Decision\n\n**Option A**: Implement loop, gate, branch now. Track for-each and waits-for separately.\n\n**Option B**: Expand scope to include for-each and waits-for formalization.\n\nRecommendation: Option A - implement core constructs, create child issues for gaps.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-23T18:04:33.194896-08:00","updated_at":"2025-12-25T14:18:03.357742-08:00","dependencies":[{"issue_id":"gt-8tmz.4","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-23T18:04:33.196543-08:00","created_by":"daemon"},{"issue_id":"gt-8tmz.4","depends_on_id":"gt-8tmz.7","type":"blocks","created_at":"2025-12-23T18:04:49.985527-08:00","created_by":"daemon"}]}
{"id":"gt-8tmz.4","title":"Control flow: loop, gate, branch","description":"Implement control flow operators for the molecule algebra.\n\n## Core Operators\n\n| Operator | Syntax | Purpose |\n|----------|--------|---------|\n| loop (fixed) | loop: { count: N, body: [steps] } | Fixed iteration |\n| loop (conditional) | loop: { until: COND, max: N, body: [steps] } | Bounded conditional iteration |\n| gate | gate: { before: step, condition: COND } | Wait for condition before proceeding |\n| branch | branch: { from: step, steps: [a,b,c], join: step } | Parallel paths that rejoin |\n\nConditions evaluated mechanically (step status, output fields) per gt-8tmz.7.\n\n## Design Review (2025-12-25)\n\nAnalyzed patrol patterns (witness, deacon, refinery) to verify these constructs\ncan express real Gas Town workflows. Key findings:\n\n### Insight: Patrol Loop is OUTSIDE the Algebra\n\nThe daemon respawns patrols. Each formula describes ONE cycle. This means:\n- Formulas don't need \"infinite loop with burn-and-respawn\"\n- loop is only for **inner loops** (refinery's per-branch processing)\n- \"burn-or-loop\" = complete cycle; daemon decides next action\n- Context cycling is external, not algebraic\n\nThis significantly simplifies the algebra.\n\n### Gap: for-each is Missing\n\nThe current proposal doesn't include for-each, but it's essential for patrol patterns:\n\n| Pattern | Use Case |\n|---------|----------|\n| Witness survey-workers | For each polecat, bond an arm (parallel) |\n| Refinery process-branch | For each branch in queue, run merge pipeline (sequential) |\n| Deacon plugin-run | For each plugin where gate open, execute |\n\nProposed syntax:\n\n for-each:\n collection: \"survey-workers.output.polecats\"\n bond: mol-polecat-arm\n vars:\n polecat_name: \"{item.name}\"\n parallel: true\n\nThis overlaps with gt-8tmz.8 (runtime dynamic expansion). Decision needed:\n- Include for-each here as control flow, OR\n- Ensure gt-8tmz.8 covers these patterns adequately\n\n### Gap: waits-for Gate Variant\n\nThe \"fanout gate\" pattern (aggregate waits for all dynamically-bonded children)\nneeds formalization:\n\n step: aggregate\n waits-for: children-of(survey-workers)\n\nCurrently exists in formulas as waits_for: \"all-children\" but not in the algebra spec.\n\n### What This Covers\n\nWith these operators (plus for-each), patrols become fully expressible:\n\n**Witness Patrol:**\n- for-each polecat -\u003e bond mol-polecat-arm (parallel)\n- gate with waits-for: all-children for aggregation\n\n**Refinery Patrol:**\n- for-each branch -\u003e process pipeline (sequential)\n- gate for test verification before merge\n\n**Deacon Patrol:**\n- for-each plugin -\u003e execute if gate open\n- Simple sequence otherwise\n\n### Scope Decision\n\n**Option A**: Implement loop, gate, branch now. Track for-each and waits-for separately.\n\n**Option B**: Expand scope to include for-each and waits-for formalization.\n\nRecommendation: Option A - implement core constructs, create child issues for gaps.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T18:04:33.194896-08:00","updated_at":"2025-12-25T14:52:37.324593-08:00","closed_at":"2025-12-25T14:52:37.324593-08:00","close_reason":"Implemented loop, branch, and gate operators. Added LoopSpec, BranchRule, GateRule types. Created controlflow.go with ApplyLoops, ApplyBranches, ApplyGates. Wired into cook.go. All 11 tests pass.","dependencies":[{"issue_id":"gt-8tmz.4","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-23T18:04:33.196543-08:00","created_by":"daemon"},{"issue_id":"gt-8tmz.4","depends_on_id":"gt-8tmz.7","type":"blocks","created_at":"2025-12-23T18:04:49.985527-08:00","created_by":"daemon"}]}
{"id":"gt-8tmz.5","title":"Aspects: AOP cross-cutting concerns","description":"Implement aspect-oriented composition:\n- Define aspects with pointcuts and advice\n- Apply aspects at bond time: bd bond mol --with-aspect security\n- Pointcuts use glob patterns to match join points\n\nEnables security-audit, logging, etc. as reusable concerns.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T18:04:34.128562-08:00","updated_at":"2025-12-25T12:15:53.16092-08:00","closed_at":"2025-12-25T12:15:53.16092-08:00","close_reason":"Aspect composition implemented: compose.aspects field, applied during cooking. Demo: shiny-secure.formula.json","dependencies":[{"issue_id":"gt-8tmz.5","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-23T18:04:34.130564-08:00","created_by":"daemon"},{"issue_id":"gt-8tmz.5","depends_on_id":"gt-8tmz.2","type":"blocks","created_at":"2025-12-23T18:04:49.898125-08:00","created_by":"daemon"},{"issue_id":"gt-8tmz.5","depends_on_id":"gt-8tmz.6","type":"blocks","created_at":"2025-12-23T18:48:18.802195-08:00","created_by":"daemon"}]}
{"id":"gt-8tmz.6","title":"Selection operators: glob, filter, children","description":"Implement selection operators for targeting:\n- step(id) - specific step\n- glob(pattern) - pattern match (*.implement)\n- filter(predicate) - status/output predicates\n- children(step), descendants(step) - tree traversal\n\nUsed by advice, expansion, and aspects for targeting.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T18:04:35.447482-08:00","updated_at":"2025-12-25T12:10:31.184745-08:00","closed_at":"2025-12-25T12:10:31.184745-08:00","close_reason":"Core selection operators implemented: MatchGlob (glob patterns), MatchPointcut (type, label), MatchAnyPointcut. Advanced operators (filter, children, descendants) can be added as needed.","dependencies":[{"issue_id":"gt-8tmz.6","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-23T18:04:35.449213-08:00","created_by":"daemon"}]}
{"id":"gt-8tmz.7","title":"Condition evaluator for gates and loops","description":"Implement mechanical condition evaluation:\n- step.status == 'complete'\n- step.output.field == value\n- children(step).all(status == 'complete')\n- file.exists(path), env.VAR\n\nKeep decidable: no arbitrary code, bounded evaluation.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T18:04:36.820385-08:00","updated_at":"2025-12-25T13:54:36.414222-08:00","closed_at":"2025-12-25T13:54:36.414222-08:00","close_reason":"Implemented condition evaluator in beads formula package","dependencies":[{"issue_id":"gt-8tmz.7","depends_on_id":"gt-8tmz","type":"parent-child","created_at":"2025-12-23T18:04:36.820807-08:00","created_by":"daemon"}]}
@@ -782,7 +782,6 @@
{"id":"gt-i4i2","title":"Update deacon.md.tmpl with correct molecule commands","description":"The deacon prompt references commands that don't exist:\n- gt mol bond → should be bd mol run or gt mol arm\n- gt mol status → needs gt mol command tree first\n\nUpdate after gt mol command tree is implemented.\n\nDepends on: gt mol command tree issue","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T13:12:26.401739-08:00","updated_at":"2025-12-22T13:19:50.641767-08:00","closed_at":"2025-12-22T13:19:50.641767-08:00","close_reason":"Updated deacon.md with correct commands: gt mol status, bd mol spawn, gt mol squash","dependencies":[{"issue_id":"gt-i4i2","depends_on_id":"gt-x74c","type":"blocks","created_at":"2025-12-22T13:12:35.69774-08:00","created_by":"daemon"}]}
{"id":"gt-i4kq","title":"Update templates for Propulsion Principle","description":"Overhaul agent prompts to embody the Universal Gas Town Propulsion Principle:\n\n\u003e If you find something on your hook, YOU RUN IT.\n\nTemplates to update:\n- [ ] deacon.md.tmpl - Check hook first, no decision logic\n- [ ] polecat.md.tmpl - Propulsion startup, follow molecule\n- [ ] witness.md.tmpl - Sling wisps when spawning agents\n- [ ] refinery.md.tmpl - Accept slung epics\n\nKey changes:\n1. Remove 'should I run this?' decision points\n2. Add 'check your hook' as step 1 of startup\n3. Make molecule-following the default mode\n4. Simplify - agents don't think, they execute","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/slit","created_at":"2025-12-22T03:17:46.464968-08:00","updated_at":"2025-12-22T23:44:05.155061-08:00","closed_at":"2025-12-22T23:44:05.155061-08:00","close_reason":"All four templates updated with Propulsion Principle","dependencies":[{"issue_id":"gt-i4kq","depends_on_id":"gt-4ev4","type":"blocks","created_at":"2025-12-22T12:10:42.245621-08:00","created_by":"daemon"},{"issue_id":"gt-i4kq","depends_on_id":"gt-uym5","type":"blocks","created_at":"2025-12-22T12:10:42.320803-08:00","created_by":"daemon"}]}
{"id":"gt-i4lo","title":"mol-polecat-work","description":"Full polecat lifecycle from assignment to decommission.\n\nThis proto enables nondeterministic idempotence for polecat work.\nA polecat that crashes after any step can restart, read its molecule state,\nand continue from the last completed step. No work is lost.\n\nVariables:\n- gt-test123 - The source issue ID being worked on","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-21T21:48:26.320963-08:00","updated_at":"2025-12-25T11:13:37.598677-08:00","closed_at":"2025-12-25T11:13:37.598677-08:00","close_reason":"Stale test molecule from Dec 21 (gt-test123)"}
{"id":"gt-i5iv0","title":"Digest: mol-deacon-patrol","description":"Patrol 13: All healthy","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T13:31:54.565104-08:00","updated_at":"2025-12-25T13:31:54.565104-08:00","closed_at":"2025-12-25T13:31:54.565074-08:00","dependencies":[{"issue_id":"gt-i5iv0","depends_on_id":"gt-gle13","type":"parent-child","created_at":"2025-12-25T13:31:54.565917-08:00","created_by":"stevey"}]}
{"id":"gt-i6b9","title":"Merge: gt-cp2s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: gt-cp2s\nrig: gastown","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-22T23:45:29.171329-08:00","updated_at":"2025-12-22T23:47:52.667765-08:00","closed_at":"2025-12-22T23:47:52.667765-08:00","close_reason":"Already merged (stale branch)"}
{"id":"gt-i6k1","title":"Clean up duplicate patrol protos (gt-qflq, gt-iep9)","description":"There are duplicate protos for patrol molecules:\n\n## Duplicates\n\n| Old Proto | New Proto | Name |\n|-----------|-----------|------|\n| gt-qflq | mol-witness-patrol | mol-witness-patrol |\n| gt-iep9 | mol-deacon-patrol | mol-deacon-patrol |\n\nThe old gt-* prefix protos were created before the formula cooking system.\nThe new mol-* prefix protos were created by `bd cook`.\n\n## Action\n\n1. Close or delete the old gt-* protos\n2. Update any references to use the new mol-* protos\n3. Verify `bd mol list` shows clean output\n\n## Root Cause\n\nThe bd cook command uses the formula name as the proto ID (mol-*), \nnot the project prefix (gt-*). This is probably correct behavior,\nbut means we have legacy protos to clean up.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T13:50:11.424341-08:00","updated_at":"2025-12-24T14:05:53.23666-08:00","closed_at":"2025-12-24T14:05:53.23666-08:00","close_reason":"Closed gt-qflq as superseded by mol-witness-patrol"}
{"id":"gt-ia0s","title":"Review: Beads Universal Data Plane documentation","description":"Review new docs/beads-data-plane.md (275 lines) for accuracy.\n\n## Commit\n- 54c8269: Add Beads Universal Data Plane documentation\n\n## Review focus\n- Accuracy of beads architecture description\n- Correct field mappings (mail → beads fields)\n- Two-level architecture (town vs rig beads) correctly explained","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-23T14:27:49.410707-08:00","updated_at":"2025-12-23T14:27:49.410707-08:00"}