bd sync: 2025-12-22 17:01:50

.beads/issues.jsonl

@@ -312,6 +312,7 @@
 {"id":"gt-fc0d","title":"self-review","description":"Review your own changes. Look for:\n- Bugs and edge cases\n- Style issues\n- Missing error handling\n- Security concerns\n\nFix any issues found before proceeding.\n\nDepends: implement","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T21:58:52.600154-08:00","updated_at":"2025-12-21T21:59:10.940985-08:00","closed_at":"2025-12-21T21:59:10.940985-08:00","close_reason":"test cleanup","dependencies":[{"issue_id":"gt-fc0d","depends_on_id":"gt-q6hl","type":"parent-child","created_at":"2025-12-21T21:58:52.60252-08:00","created_by":"stevey"},{"issue_id":"gt-fc0d","depends_on_id":"gt-adc9","type":"blocks","created_at":"2025-12-21T21:58:52.603308-08:00","created_by":"stevey"}],"wisp":true}
 {"id":"gt-fjvo","title":"mol-code-review: Self-improving code review molecule","description":"Create a code review molecule that enables Gas Town to self-improve through automated PR review. Flywheel: review generates quality checks, discovered issues, pattern learning.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:03:10.117272-08:00","updated_at":"2025-12-20T21:03:10.117272-08:00"}
 {"id":"gt-fko","title":"Add Gas Town theory of operation to all role primings","description":"All roles (Mayor, Witness, Refinery, Polecat) should get basic GT architecture context: harness, rigs, agents, mail, beads workflow","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T16:42:46.445526-08:00","updated_at":"2025-12-17T17:00:36.466742-08:00","closed_at":"2025-12-17T17:00:36.466742-08:00","dependencies":[{"issue_id":"gt-fko","depends_on_id":"gt-l1o","type":"blocks","created_at":"2025-12-17T16:42:54.87032-08:00","created_by":"daemon"},{"issue_id":"gt-fko","depends_on_id":"gt-dkc","type":"blocks","created_at":"2025-12-17T16:42:56.409618-08:00","created_by":"daemon"}]}
+{"id":"gt-fly0","title":"bd close --continue: auto-advance to next molecule step","description":"Add --continue flag to bd close for seamless molecule step transitions.\n\n## Usage\n\nbd close \u003cstep-id\u003e --continue [--no-auto]\n\n## Behavior\n\n1. Closes the specified step\n2. Finds next ready step in same molecule (sibling/child)\n3. By default, marks it in_progress (--no-auto to skip)\n4. Outputs the transition\n\n## Output\n\n[checkmark] Closed gt-abc.3: Implement feature\n\nNext ready in molecule:\n  gt-abc.4: Write tests\n\n[arrow] Marked in_progress (use --no-auto to skip)\n\n## If no next step\n\n[checkmark] Closed gt-abc.6: Exit decision\n\nMolecule gt-abc complete! All steps closed.\nConsider: bd mol squash gt-abc --summary '...'\n\n## Key behaviors\n- Detects parent molecule from closed step\n- Finds next unblocked sibling\n- Auto-claims by default (propulsion principle)\n- Graceful handling when molecule is complete\n\n## Beads feature\nThis is a bd command - needs implementation in beads repo.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-22T17:01:00.437929-08:00","updated_at":"2025-12-22T17:01:00.437929-08:00"}
 {"id":"gt-fmkr","title":"Merge: gt-pyqv","description":"branch: polecat/dementus\ntarget: main\nsource_issue: gt-pyqv\nrig: gastown","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:33.237777-08:00","updated_at":"2025-12-21T17:20:27.508367-08:00","closed_at":"2025-12-21T17:20:27.508367-08:00","close_reason":"ORPHANED: Branch never pushed, worktree deleted"}
 {"id":"gt-foct","title":"Merge: gt-5af.6","description":"branch: polecat/Slit\ntarget: main\nsource_issue: gt-5af.6\nrig: gastown","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-19T17:27:12.608473-08:00","updated_at":"2025-12-19T18:26:14.104443-08:00","closed_at":"2025-12-19T17:48:44.619449-08:00"}
 {"id":"gt-frs","title":"Polecat name pooling: Bounded reusable names","description":"Polecats reuse names from a bounded pool (50) with overflow to sequence numbers.\n\n## Naming Scheme\n- Pool: polecat-01 through polecat-50 (prefer low numbers)\n- Overflow: \u003crigname\u003e-\u003csequenceNumber\u003e (e.g., beads-51, gastown-52)\n\n## Design\n- Witness tracks which pool names are in use\n- On spawn: pick first available from pool\n- If pool exhausted: use rigname-N format\n- On completion: pool name returns, sequence numbers don't\n\n## Why?\n- User experience: tmux sessions survive polecat restarts\n- Users stay attached, see new polecat start (like mayor respawn loop)\n- Bounded resource usage for common case\n- Scales beyond 50 when needed\n\n## Implementation\n- Witness maintains name allocation in beads or local state\n- Tmux session runs respawn loop (like mayor)\n- Name released on graceful exit or when witness detects dead session","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-18T18:32:28.43866-08:00","updated_at":"2025-12-19T17:22:52.551244-08:00","closed_at":"2025-12-19T16:29:30.648439-08:00"}
@@ -441,6 +442,7 @@
 {"id":"gt-lwuu.8","title":"request-shutdown","description":"Send shutdown request to Witness.\nWait for termination.\n\nThe polecat is now ready to be cleaned up.\nDo not exit directly - wait for Witness to kill the session.\n\nDepends: generate-summary","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T21:47:53.776509-08:00","updated_at":"2025-12-21T21:47:53.776509-08:00","labels":["template"],"dependencies":[{"issue_id":"gt-lwuu.8","depends_on_id":"gt-lwuu","type":"parent-child","created_at":"2025-12-21T21:47:53.777872-08:00","created_by":"daemon"}]}
 {"id":"gt-lx3n","title":"Witness startup: bond mol-witness-patrol on start","description":"Wire up Witness to automatically bond its patrol molecule on startup.\n\n## Desired behavior\nOn Witness session start:\n1. gt prime detects RoleWitness\n2. Check for existing in-progress patrol\n3. If found: resume from current step\n4. If not found: bd mol bond mol-witness-patrol --wisp\n5. Output patrol context to agent\n\n## Depends on\n- gt-83k0 (mol-witness-patrol definition)\n- gt-caih (handoff bead state persistence)","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-22T16:43:42.840567-08:00","updated_at":"2025-12-22T16:43:42.840567-08:00","dependencies":[{"issue_id":"gt-lx3n","depends_on_id":"gt-83k0","type":"blocks","created_at":"2025-12-22T16:43:59.685455-08:00","created_by":"daemon"},{"issue_id":"gt-lx3n","depends_on_id":"gt-caih","type":"blocks","created_at":"2025-12-22T16:43:59.760763-08:00","created_by":"daemon"}]}
 {"id":"gt-lxsw","title":"gt done: Command doesn't exist but documented in polecat CLAUDE.md","notes":"The polecat CLAUDE.md documents 'gt done' as the command to signal work is ready for merge queue, but running it gives 'unknown command'. Either implement the command or update the documentation.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-20T07:59:44.548479-08:00","updated_at":"2025-12-20T13:20:50.919481-08:00","closed_at":"2025-12-20T13:20:50.919481-08:00"}
+{"id":"gt-lz13","title":"Update templates with molecule navigation workflow","description":"Update all agent templates to use new molecule navigation commands.\n\n## Commands to integrate\n- bd mol current: orientation after startup/handoff\n- bd close --continue: seamless step transitions\n\n## Templates to update\n\n### prompts/roles/polecat.md\n- Add bd mol current to 'Finding Your Work' section\n- Replace manual 3-command dance with bd close --continue\n- Update 'Working Through Steps' section\n\n### prompts/roles/crew.md  \n- Add molecule navigation to workflow section\n- Show bd mol current for session startup\n\n### prompts/roles/refinery.md\n- Update patrol step transitions to use --continue\n\n### prompts/roles/witness.md\n- Update patrol step transitions to use --continue\n\n### prompts/roles/deacon.md\n- Update patrol step transitions to use --continue\n\n## Key message\nThe Propulsion Principle: close a step, immediately get handed the next.\nNo friction, no forgetting, no 3-command dance.\n\n## Depends on\n- gt-qswb (bd mol current)\n- gt-fly0 (bd close --continue)","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-22T17:01:12.119194-08:00","updated_at":"2025-12-22T17:01:12.119194-08:00","dependencies":[{"issue_id":"gt-lz13","depends_on_id":"gt-qswb","type":"blocks","created_at":"2025-12-22T17:01:31.707885-08:00","created_by":"daemon"},{"issue_id":"gt-lz13","depends_on_id":"gt-fly0","type":"blocks","created_at":"2025-12-22T17:01:31.78232-08:00","created_by":"daemon"}]}
 {"id":"gt-m3hh","title":"Merge: gt-7hor","description":"branch: polecat/slit\ntarget: main\nsource_issue: gt-7hor\nrig: gastown","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-22T12:32:43.108463-08:00","updated_at":"2025-12-22T16:01:13.501585-08:00","closed_at":"2025-12-22T16:01:13.501585-08:00","close_reason":"Merged to main"}
 {"id":"gt-mc4n","title":"load-context","description":"Run gt prime and bd prime. Verify issue assignment.\nCheck inbox for any relevant messages.\n\nRead the assigned issue (gt-test123) and understand the requirements.\nIdentify any blockers or missing information.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T21:56:18.534569-08:00","updated_at":"2025-12-21T21:56:27.508015-08:00","closed_at":"2025-12-21T21:56:27.508015-08:00","close_reason":"test cleanup","dependencies":[{"issue_id":"gt-mc4n","depends_on_id":"gt-zjqs","type":"parent-child","created_at":"2025-12-21T21:56:18.535487-08:00","created_by":"stevey"}],"wisp":true}
 {"id":"gt-mcjd","title":"Work on gt-o9j: Fix tmux status bar polecat count - exclu...","description":"Work on gt-o9j: Fix tmux status bar polecat count - exclude static roles (mayor, deacon, witnesses, refineries, docs, hop). Run 'bd show gt-o9j' for details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-20T07:52:51.623541-08:00","updated_at":"2025-12-20T07:56:41.861992-08:00","closed_at":"2025-12-20T07:56:41.861992-08:00"}
@@ -465,6 +467,7 @@
 {"id":"gt-odvf","title":"Document bd mol bond/squash/burn CLI","description":"Create CLI reference documentation for molecule commands:\n\n## bd mol bond\n\nInstantiate a proto into a runnable molecule.\n\n```bash\nbd mol bond \u003cproto-id\u003e [--wisp] [--assignee=\u003caddr\u003e]\n```\n\n- Default: creates a Mol (durable, in main beads)\n- --wisp: creates a Wisp (ephemeral, in .beads-ephemeral/)\n- --assignee: who will execute this molecule\n\n## bd mol squash\n\nComplete a molecule and generate digest.\n\n```bash\nbd mol squash \u003cmol-id\u003e --summary='...'\n```\n\n- For Mol: creates digest in git history\n- For Wisp: evaporates (no permanent record)\n- --summary: required summary of what was accomplished\n\n## bd mol burn\n\nAbandon a molecule without completing.\n\n```bash\nbd mol burn \u003cmol-id\u003e [--reason='...']\n```\n\n- Discards molecule state\n- No digest created\n- Use when molecule is no longer needed","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T16:33:06.462105-08:00","updated_at":"2025-12-21T17:20:42.829495-08:00","dependencies":[{"issue_id":"gt-odvf","depends_on_id":"gt-62hm","type":"blocks","created_at":"2025-12-21T16:33:17.530156-08:00","created_by":"daemon"}]}
 {"id":"gt-oiv0","title":"Remove bd sync instruction from polecat startup workflow","description":"Polecats are instructed to run `bd sync --from-main` on startup (spawn.go:634).\n\n## Problem\n- Spawn command already syncs beads before spawning (line 239)\n- Polecats share rig-level beads via `.beads/redirect`\n- Multiple polecats starting simultaneously all try to sync same shared beads\n- This causes git conflicts/failures when many polecats spawn at once\n\n## Observed\nUser reported: 'all polecats failing on beads sync on startup in one run'\n\n## Fix\nRemove line 634 from buildWorkAssignmentMail():\n```\nbody.WriteString(\"2. Run \\`bd sync --from-main\\` to get fresh beads\\n\")\n```\n\nPolecats only need to sync at END of work (already in steps 5/7).\n\n## Files\n- internal/cmd/spawn.go: buildWorkAssignmentMail() and buildSpawnContext()","status":"open","priority":1,"issue_type":"bug","created_at":"2025-12-21T23:45:52.25177-08:00","updated_at":"2025-12-21T23:45:52.25177-08:00"}
 {"id":"gt-on46","title":"Work on gt-fix-bugs: Fix blocking infrastructure bugs. Se...","description":"Work on gt-fix-bugs: Fix blocking infrastructure bugs. See issue for details. Run 'bd show gt-fix-bugs' to see the full issue.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-20T03:47:14.322631-08:00","updated_at":"2025-12-20T03:52:16.049326-08:00","closed_at":"2025-12-20T03:52:16.049326-08:00"}
+{"id":"gt-ooz6","title":"bd close hooks: context check and notifications","description":"Add hook system to bd close for context checking and notifications.\n\n## Concept\n\nRegister hooks that run on every bd close:\n\n# .beads/config.yaml\nhooks:\n  on_close:\n    - command: 'gt context-check'\n    - notify: 'Next step ready'\n\n## Use cases\n\n### Context check on close\nAfter closing a step, check if context is getting full.\nIf \u003e80%, output warning suggesting session cycling.\n\n### Next step notification  \nAutomatically show next ready step (complements --continue).\n\n### Custom actions\nUser-defined scripts for workflow automation.\n\n## Hook types\n\n- command: Run shell command with env vars (BEAD_ID, BEAD_TITLE, etc)\n- notify: Send message to agent\n- webhook: POST to URL (future)\n\n## Integration with context detection\n\nThe context-check hook could:\n1. Capture tmux pane (if in tmux session)\n2. Estimate context usage (turn count, output length)\n3. If high, output: 'Context at ~85%. Consider cycling.'\n\n## Priority\nP2 - nice to have, not blocking launch.\n\n## Related\n- gt-qswb (bd mol current)\n- gt-fly0 (bd close --continue)","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-22T17:01:44.717704-08:00","updated_at":"2025-12-22T17:01:44.717704-08:00"}
 {"id":"gt-op78","title":"Session cycling: Auto-spawn successor when context full","description":"Enable automatic session succession for crew workers.\n\nWhen a crew worker's context fills up (\u003e80%), they should:\n1. Write handoff mail to themselves\n2. Signal session end\n3. System auto-spawns successor session\n4. Successor reads handoff, finds attached work, auto-continues\n\nThis completes the autonomous overnight work pattern from gt-9g82.\n\nDepends on:\n- Detecting context fullness (Claude Code API?)\n- Session spawning mechanism (tmux/daemon)\n- Handoff protocol already implemented","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-22T16:18:27.570996-08:00","updated_at":"2025-12-22T16:18:27.570996-08:00"}
 {"id":"gt-ouo","title":"gt swarm start: Does not spawn polecat sessions","description":"gt swarm start marks swarm as 'active' but doesn't start any polecat sessions.\n\nRepro:\n1. gt swarm create gastown --epic gt-hw6 --worker Toast --worker Nux\n2. gt swarm start gt-hw6\n3. gt session list - shows no new sessions\n\nExpected: Polecat sessions should start for each worker.\nActual: No sessions started, workers sit idle.","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-12-17T22:25:43.430981-08:00","updated_at":"2025-12-17T22:31:58.849531-08:00","closed_at":"2025-12-17T22:31:58.849531-08:00"}
 {"id":"gt-ov2","title":"Refinery agent: merge queue processing loop","description":"The Refinery agent processes the merge queue, merging polecat work to main.\n\n## Interface\n\n```go\ntype Refinery struct {\n    rig    *Rig\n    queue  *MergeQueue\n    git    *Git\n    mail   *Mailbox\n    config RefineryConfig\n}\n\ntype RefineryConfig struct {\n    AutoMerge     bool          // Auto-merge passing MRs\n    RunTests      bool          // Run tests before merge\n    TestCommand   string        // Command to run tests\n    RequireReview bool          // Require review before merge (future)\n}\n\nfunc NewRefinery(rig *Rig, ...) *Refinery\n\n// Lifecycle\nfunc (r *Refinery) Start() error\nfunc (r *Refinery) Stop() error\nfunc (r *Refinery) IsRunning() bool\n\n// Processing\nfunc (r *Refinery) ProcessQueue() error\nfunc (r *Refinery) ProcessMR(mr *MergeRequest) error\n```\n\n## Processing Loop\n\n1. Check queue for pending MRs\n2. For each pending MR:\n   a. Fetch polecat branch\n   b. Attempt merge to refinery/rig (local main)\n   c. Run tests if configured\n   d. If pass: push to origin, mark merged\n   e. If fail: mark rejected, notify polecat\n3. Sleep, repeat\n\n## Merge Strategy\n\n- Fast-forward when possible\n- Merge commit when not\n- On conflict: reject MR, polecat must rebase\n\n## Test Integration\n\nIf tests configured:\n```bash\ncd refinery/rig\ngit merge polecat/branch\n\u003ctest_command\u003e  # e.g., go test ./...\n```\nResult determines merge/reject.\n\n## Notifications\n\nOn merge success:\n- Mail to polecat: \"Your work merged\"\n- Update bead if issue tracked\n\nOn merge failure:\n- Mail to polecat: \"Merge failed: \u003creason\u003e\"\n- Include conflict details if applicable\n\n## Dependencies\n\nNeeds: Rig management, Git wrapper, Mail system, Merge queue","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-15T23:22:08.498771-08:00","updated_at":"2025-12-16T14:20:35.032221-08:00","closed_at":"2025-12-16T14:20:35.032221-08:00","dependencies":[{"issue_id":"gt-ov2","depends_on_id":"gt-u1j.14","type":"blocks","created_at":"2025-12-15T23:22:21.801826-08:00","created_by":"daemon"},{"issue_id":"gt-ov2","depends_on_id":"gt-u1j.6","type":"blocks","created_at":"2025-12-15T23:22:21.89716-08:00","created_by":"daemon"}]}
@@ -493,6 +496,7 @@
 {"id":"gt-qrze","title":"Work on gt-role-template: Refine witness/CLAUDE.md role t...","description":"Work on gt-role-template: Refine witness/CLAUDE.md role template. Add clearer heartbeat protocol, mail checking procedure, nudge decision criteria, escalation thresholds. Run 'bd show gt-role-template' for details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-20T07:53:27.305468-08:00","updated_at":"2025-12-20T07:58:39.269234-08:00","closed_at":"2025-12-20T07:58:39.269234-08:00"}
 {"id":"gt-qscw","title":"Merge: gt-72so","description":"branch: polecat/Ace\ntarget: main\nsource_issue: gt-72so\nrig: gastown","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-19T16:20:02.203335-08:00","updated_at":"2025-12-19T18:26:14.105337-08:00","closed_at":"2025-12-19T17:48:09.571107-08:00"}
 {"id":"gt-qsvq","title":"gt doctor: Detect and clean up orphaned sessions/processes","description":"## Problem\nOrphaned tmux sessions and Claude processes accumulate over time, consuming memory.\n\n## Discovered Orphans\n- gt-deacon: Idle Claude session, not part of any rig\n\n## Proposed Solution\n\n### gt doctor --check (default)\nDetect issues without fixing:\n- Orphan sessions (not matching rig/polecat/crew/witness/refinery/mayor pattern)\n- Claude processes without parent tmux session\n- Tmux sessions without Claude (stuck at bash prompt)\n- Polecats marked 'working' but session idle\n\n### gt doctor --fix\nClean up detected issues:\n- Kill orphan sessions\n- Kill orphan Claude processes\n- Optionally reset stuck polecat state\n\n### gt gc (alternative name)\nShort alias for cleanup operations.\n\n## Acceptance Criteria\n- [ ] Detects orphan sessions\n- [ ] Detects orphan processes\n- [ ] Safe cleanup (doesn't kill active work)\n- [ ] Reports what was cleaned","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T01:06:39.046959-08:00","updated_at":"2025-12-20T07:54:51.210265-08:00","closed_at":"2025-12-20T07:54:51.210265-08:00"}
+{"id":"gt-qswb","title":"bd mol current: soft cursor showing current/next step","description":"Add bd mol current command for molecule navigation orientation.\n\n## Usage\n\nbd mol current [mol-id]\n\nIf mol-id given, show status for that molecule.\nIf not given, infer from in_progress issues assigned to current agent.\n\n## Output\n\nYou're working on molecule gt-abc (Feature X)\n\n  [checkmark] gt-abc.1: Design\n  [checkmark] gt-abc.2: Scaffold  \n  [checkmark] gt-abc.3: Implement\n  [arrow] gt-abc.4: Write tests [in_progress] \u003c- YOU ARE HERE\n  [circle] gt-abc.5: Documentation\n  [circle] gt-abc.6: Exit decision\n\nProgress: 3/6 steps complete\n\n## Key behaviors\n- Shows full molecule structure with status indicators\n- Highlights current in_progress step\n- If no in_progress, highlights first ready step\n- Works without explicit cursor tracking (inferred from state)\n\n## Implementation notes\n- Query children of mol-id\n- Sort by dependency order\n- Find first in_progress or first ready\n- Format with status indicators\n\n## Beads feature\nThis is a bd command - needs implementation in beads repo.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-22T17:00:47.394852-08:00","updated_at":"2025-12-22T17:00:47.394852-08:00"}
 {"id":"gt-qwin","title":"Refinery and witness rigs should redirect .beads to mayor rig","description":"The refinery's rig clone and witness rig clones should have their .beads directories redirect to the mayor's rig beads (like polecats do).\n\nCurrent state:\n- Polecats have .beads symlinked/redirected to mayor rig beads\n- Refinery and witness have their own .beads (or none)\n\nDesired state:\n- refinery/rig/.beads -\u003e mayor/rig/.beads (or equivalent redirect)\n- witness/rig/.beads -\u003e mayor/rig/.beads (or equivalent redirect)\n\nThis ensures all rig agents share the same issue tracking state.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-22T14:27:37.703044-08:00","updated_at":"2025-12-22T14:27:37.703044-08:00"}
 {"id":"gt-qwyu","title":"Test issue for spawn molecule","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T21:58:43.699993-08:00","updated_at":"2025-12-21T21:59:10.936251-08:00","closed_at":"2025-12-21T21:59:10.936251-08:00","close_reason":"test cleanup"}
 {"id":"gt-qxei","title":"Test4","description":"test4 body","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-20T17:47:12.137051-08:00","updated_at":"2025-12-20T17:51:08.785516-08:00","closed_at":"2025-12-20T17:51:08.785516-08:00"}
@@ -511,6 +515,7 @@
 {"id":"gt-rm3","title":"CLI: gt refinery commands (start, stop, status, queue)","description":"CLI commands for managing the Refinery agent.\n\n## Commands\n\n```bash\ngt refinery start \u003crig\u003e      # Start refinery for a rig\ngt refinery stop \u003crig\u003e       # Stop refinery\ngt refinery status \u003crig\u003e     # Show refinery status\ngt refinery queue \u003crig\u003e      # Show merge queue\n```\n\n## gt refinery start\n\nStarts the Refinery daemon for the specified rig.\n\nOptions:\n- --foreground: Run in foreground (default: background)\n- --auto-merge: Enable auto-merge (default: from config)\n\n## gt refinery stop\n\nStops a running Refinery. Gracefully finishes current MR if processing.\n\n## gt refinery status\n\nShows:\n- Running state (running/stopped)\n- Current MR being processed (if any)\n- Queue length\n- Last merge time\n- Recent activity\n\n## gt refinery queue\n\nShows the merge queue:\n```\nMerge queue for 'wyvern':\n  1. [pending] Toast/polecat-auth-fix (15m ago)\n  2. [pending] Capable/polecat-new-feature (5m ago)\n  \n1 merged today, 0 rejected\n```\n\n## Implementation\n\nUses gt-ov2 (Refinery agent) for daemon functionality.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-15T23:22:24.754361-08:00","updated_at":"2025-12-16T14:16:34.593637-08:00","closed_at":"2025-12-16T14:16:34.593637-08:00","dependencies":[{"issue_id":"gt-rm3","depends_on_id":"gt-ov2","type":"blocks","created_at":"2025-12-15T23:22:30.679909-08:00","created_by":"daemon"}]}
 {"id":"gt-rp0k","title":"Extend auto-continue to polecats (not just crew)","description":"gt prime currently only outputs AUTO-CONTINUE MODE for crew workers.\nPolecats with attached work should also auto-continue.\n\n## Current behavior\noutputCrewAttachmentStatus() in prime.go:\n- Only runs for RoleCrew\n- Outputs '→ AUTO-CONTINUE MODE' when attached work detected\n\n## Desired behavior\n- Rename to outputAttachmentStatus() or similar\n- Run for RoleCrew AND RolePolecat\n- Same directive: if attachment exists, work immediately\n\n## The Propulsion Principle\n'If you find something on your hook, YOU RUN IT.'\n\nThis applies to ALL workers, not just crew.\n\n## Implementation\n1. Extend role check in outputCrewAttachmentStatus()\n2. Adjust assignee detection for polecats vs crew\n3. Test with both worker types","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-22T16:43:22.149252-08:00","updated_at":"2025-12-22T16:43:22.149252-08:00"}
 {"id":"gt-rr1i","title":"mol-swarm-cleanup: Post-swarm debris cleanup molecule","description":"After a 20+ worker swarm completed, found significant beads debris:\n- 18 stale messages (work assignments, lifecycle requests, swarm instructions)\n- 3 completed issues still open/in_progress\n- Test messages accumulated\n\nNeed: Document a post-swarm checklist or create gt swarm cleanup command that:\n1. Closes stale work assignment messages\n2. Reviews in_progress issues for completion\n3. Closes orphaned lifecycle messages\n4. Optionally archives test messages","status":"open","priority":3,"issue_type":"chore","created_at":"2025-12-20T03:12:28.646175-08:00","updated_at":"2025-12-20T03:15:45.521085-08:00"}
+{"id":"gt-rt6g","title":"Deacon: Don't heartbeat Mayor during active work or human input","description":"Update deacon prompting to be smarter about when to heartbeat the Mayor:\n\n1. Don't heartbeat if the Mayor appears to be actively working (recent activity)\n2. Don't heartbeat if the Mayor is waiting for human input (e.g., asked a question)\n3. Only heartbeat if the Mayor seems to have been idle for a long time\n\nThe deacon should check for signs of activity before nudging, to avoid interrupting productive work or blocking on legitimate user input.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-22T17:00:28.667896-08:00","updated_at":"2025-12-22T17:00:36.803457-08:00"}
 {"id":"gt-ruw","title":"Fix TestHasPolecat test failure in internal/session","description":"TestHasPolecat in internal/session/manager_test.go fails because it expects\nspecific polecats (Toast, Cheedo) to exist in the test environment.\n\nError:\n```\nmanager_test.go:46: expected hasPolecat(Toast) = true\nmanager_test.go:49: expected hasPolecat(Cheedo) = true\n```\n\nFix: Either create test fixtures or mock the filesystem check.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T15:02:30.030032-08:00","updated_at":"2025-12-19T11:58:56.1846-08:00","closed_at":"2025-12-19T11:58:56.1846-08:00"}
 {"id":"gt-ry8","title":"HOP: Entity chain tracking for agents","description":"Track work history per-entity (CV chains). See ~/ai/stevey-gastown/hop/decisions/002-entity-chains.md for design. Post-v0.1 work.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T01:00:41.347764-08:00","updated_at":"2025-12-17T01:00:41.347764-08:00"}
 {"id":"gt-s3m0","title":"gt polecat: add 'done' or 'finish' command to transition from working to idle","description":"When a polecat finishes work but session wasn't properly cleaned up, there's no way to reset it from 'working' state back to 'idle'.\n\nTried:\n```\ngt polecat sleep gastown/Angharad\nError: sleeping polecat: polecat is not active (state: working)\n```\n\nThe sleep command only works on 'active' polecats, not 'working' ones.\n\nHad to manually edit state.json to reset:\n```\njq '.state = \"idle\" | .issue = \"\"' state.json\n```\n\nNeed a command like:\n```\ngt polecat done gastown/Angharad   # working -\u003e idle\ngt polecat finish gastown/Angharad # working -\u003e idle  \ngt polecat reset gastown/Angharad  # any state -\u003e idle (force)\n```","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-19T01:41:39.851037-08:00","updated_at":"2025-12-19T01:57:17.031611-08:00","closed_at":"2025-12-19T01:57:17.031611-08:00"}
@@ -571,6 +576,7 @@
 {"id":"gt-u818","title":"Witness Plugin System","description":"Plugin infrastructure for witness patrol customization.\n\n## Plugin Location\n`\u003crig\u003e/plugins/witness/\u003cplugin-name\u003e/`\n\n## Plugin Structure\n```\nplugin.yaml   # Config: name, description, trigger, tier\nprompt.md     # The prompt to run\n```\n\n## plugin.yaml Schema\n```yaml\nname: plugin-name\ndescription: What it does\ntrigger: patrol          # When to run (patrol, on-nudge, on-shutdown)\ntier: haiku              # Model tier (haiku, sonnet, opus)\ninput: polecat-list      # What context to gather (polecat-list, session-capture, etc)\n```\n\n## Execution\n1. Witness reads plugins from directory\n2. For each plugin matching current trigger:\n   - Gather specified input context\n   - Run prompt.md against specified tier\n   - Parse output for gt commands\n   - Execute commands\n\n## CLI\n- `gt plugin list \u003crig\u003e` - List installed plugins\n- `gt plugin run \u003crig\u003e \u003cplugin\u003e` - Manual run","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-21T16:16:53.886931-08:00","updated_at":"2025-12-21T16:16:53.886931-08:00"}
 {"id":"gt-u82","title":"Design: Mayor session cycling and handoff","description":"Design for Mayor session cycling and structured handoff.\n\n## Overview\n\nMayor coordinates across all rigs and runs for extended periods. Needs session cycling pattern with structured handoff notes.\n\n## Key Elements\n\n1. Session cycling recognition (when to cycle)\n2. Handoff note format (structured state capture)\n3. Handoff delivery (mail to self)\n4. Fresh session startup (reading and resuming)\n\n## Subtasks (implementation)\n\n- gt-g2d: Mayor session cycling prompting\n- gt-sye: Mayor startup protocol prompting\n- gt-vci: Mayor handoff mail template\n- gt-1le: town handoff command (optional, P2)\n\n**Design complete.** Each subtask has full specification in its description.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-15T20:03:16.125725-08:00","updated_at":"2025-12-15T20:49:26.203276-08:00","closed_at":"2025-12-15T20:16:10.772149-08:00"}
 {"id":"gt-uhc3","title":"gt mq list shows empty when MRs exist","description":"The gt mq list command returns empty results even when merge requests exist in the queue.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-21T17:51:18.712633-08:00","updated_at":"2025-12-21T17:51:18.712633-08:00"}
+{"id":"gt-um6q","title":"Update docs with molecule navigation workflow","description":"Update architecture and workflow docs with new molecule navigation.\n\n## Docs to update\n\n### docs/molecules.md\n- Add 'Navigating Molecules' section\n- Document bd mol current usage\n- Document bd close --continue workflow\n- Show the propulsion pattern\n\n### docs/propulsion-principle.md\n- Add molecule navigation as key enabler\n- Show before/after workflow comparison\n\n### docs/polecat-wisp-architecture.md\n- Update step execution section\n- Show bd close --continue in examples\n\n## New section content\n\n### Molecule Navigation\n\nFinding your place:\n  bd mol current              # Where am I?\n  bd mol current gt-abc       # Status of specific molecule\n\nSeamless transitions:\n  bd close gt-abc.3 --continue   # Close and advance\n  bd close gt-abc.3 --no-auto    # Close but don't auto-claim next\n\nThe old way (3 commands):\n  bd close gt-abc.3\n  bd ready --parent=gt-abc\n  bd update gt-abc.4 --status=in_progress\n\nThe new way (1 command):\n  bd close gt-abc.3 --continue\n\n## Depends on\n- gt-qswb (bd mol current)\n- gt-fly0 (bd close --continue)","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-22T17:01:24.849951-08:00","updated_at":"2025-12-22T17:01:24.849951-08:00","dependencies":[{"issue_id":"gt-um6q","depends_on_id":"gt-qswb","type":"blocks","created_at":"2025-12-22T17:01:31.856627-08:00","created_by":"daemon"},{"issue_id":"gt-um6q","depends_on_id":"gt-fly0","type":"blocks","created_at":"2025-12-22T17:01:31.930072-08:00","created_by":"daemon"}]}
 {"id":"gt-unrd","title":"Fix gt prime to give crew workers crew context","description":"gt prime currently gives Mayor context to all agents. Crew workers should get crew-specific context. Also extract shared theory of operation from mayor priming into shared context for all roles.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-19T15:37:49.671015-08:00","updated_at":"2025-12-19T17:22:52.551704-08:00","closed_at":"2025-12-19T15:41:38.806903-08:00"}
 {"id":"gt-upom","title":"Witness patrol: cleanup idle orphan polecats","description":"Add patrol step to find and cleanup polecats that are idle with no assigned issue. These orphans occur when polecats crash before sending DONE or Witness misses the message. Patrol should verify git is clean before removing worktree. Part of gt-rana.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-21T23:09:41.756753-08:00","updated_at":"2025-12-21T23:09:41.756753-08:00"}
 {"id":"gt-us8","title":"Daemon: configurable heartbeat interval","description":"Heartbeat interval is hardcoded to 60s. Should be configurable via:\n- town.json config\n- Command line flag\n- Environment variable\n\nDefault 60s is reasonable but some deployments may want faster/slower.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-18T13:38:14.282216-08:00","updated_at":"2025-12-18T13:38:14.282216-08:00","dependencies":[{"issue_id":"gt-us8","depends_on_id":"gt-99m","type":"blocks","created_at":"2025-12-18T13:38:26.704111-08:00","created_by":"daemon"}]}