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@@ -59,7 +59,7 @@
{"id":"gt-3x0z.6","title":"Phase 2.3: Polecat CLAUDE.md molecule workflow protocol","description":"Update polecat prompting for molecule-based work.\n\n## CLAUDE.md Updates\n\nAdd section on molecule workflow:\n\n```markdown\n## Molecule Workflow\n\nWhen assigned a molecule (check gt prime output):\n\n1. Follow molecule steps in order\n2. Mark steps complete: bd mol step complete \u003cstep-id\u003e\n3. Before signaling done:\n a. Generate summary of work performed\n b. Run: bd squash \u003cmolecule-root\u003e --summary \"\u003cyour summary\u003e\"\n4. Then signal done as normal\n\n### Summary Guidelines\n\nYour summary should include:\n- What was the task?\n- What did you do?\n- What was the outcome?\n- Any issues or follow-ups?\n\nKeep it to 2-4 sentences. This becomes the permanent record.\n```","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/rictus","created_at":"2025-12-21T14:33:45.24122-08:00","updated_at":"2025-12-21T16:30:46.776078-08:00","closed_at":"2025-12-21T16:30:46.776078-08:00","close_reason":"Added molecule workflow section to polecat.md.tmpl with step-by-step protocol and summary guidelines","dependencies":[{"issue_id":"gt-3x0z.6","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:33:45.241575-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.6","depends_on_id":"gt-3x0z.4","type":"blocks","created_at":"2025-12-21T15:22:47.355729-08:00","created_by":"daemon"}]}
{"id":"gt-3x0z.7","title":"Phase 3.1: Summary generation protocol","description":"Define how agents generate summaries for squash.\n\n## The Problem\n\nBeads doesn't make AI calls (inversion of control). Gas Town agents must:\n1. Generate their own summary before calling squash\n2. Pass summary to bd squash command\n\n## Summary Template\n\n```\nTask: \u003csource issue title\u003e\nAction: \u003cwhat was done - fix/implement/refactor/etc\u003e\nOutcome: \u003cresult - tests pass, committed, needs follow-up, etc\u003e\nDetails: \u003c1-2 sentences of specifics if needed\u003e\n```\n\n## Example\n\n```\nTask: Fix lifecycle parser matching bug (gt-rixa)\nAction: Reordered conditional checks in parseLifecycleRequest\nOutcome: Tests passing, committed to polecat/furiosa\nDetails: The 'cycle' keyword was matching 'lifecycle:' prefix. Now checks restart/shutdown first, uses word boundary for cycle.\n```\n\n## Command\n\n```bash\nbd squash eph-abc123 --summary \"Task: Fix lifecycle parser...\"\n```","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/furiosa","created_at":"2025-12-21T14:34:12.86627-08:00","updated_at":"2025-12-21T18:20:28.310235-08:00","closed_at":"2025-12-21T18:20:28.310235-08:00","close_reason":"Added summary generation protocol to polecat.md.tmpl with Task/Action/Outcome/Details template and guidelines","dependencies":[{"issue_id":"gt-3x0z.7","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:12.868178-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.7","depends_on_id":"gt-3x0z.6","type":"blocks","created_at":"2025-12-21T14:34:40.530235-08:00","created_by":"daemon"}]}
{"id":"gt-3x0z.8","title":"Phase 3.2: mol-polecat-work squash step","description":"Add summary+squash as final steps in mol-polecat-work.\n\n## Current Steps\n\n1. read-assignment\n2. understand-task\n3. implement-solution\n4. verify-tests\n5. commit-work\n6. signal-done\n\n## Updated Steps\n\n1. read-assignment\n2. understand-task\n3. implement-solution\n4. verify-tests\n5. commit-work\n6. **generate-summary** ← NEW\n7. **squash-molecule** ← NEW\n8. signal-done\n\n## Step Definitions\n\n### generate-summary\nAgent writes a concise summary following the template.\nSave to a local variable or temp file.\n\n### squash-molecule\nRun: bd squash $MOLECULE_ROOT --summary \"$SUMMARY\"\nThis creates digest in main beads, cleans ephemeral.\n\n## Update Location\n\nThis requires updating the mol-polecat-work definition in beads molecule catalog.","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/furiosa","created_at":"2025-12-21T14:34:12.946518-08:00","updated_at":"2025-12-21T18:32:00.025061-08:00","closed_at":"2025-12-21T18:32:00.025061-08:00","close_reason":"Added generate-summary and squash-molecule steps to mol-polecat-work molecule with updated dependency chain","dependencies":[{"issue_id":"gt-3x0z.8","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:12.946899-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.8","depends_on_id":"gt-3x0z.7","type":"blocks","created_at":"2025-12-21T14:34:40.601367-08:00","created_by":"daemon"}]}
{"id":"gt-3x0z.9","title":"Phase 4.1: mol-deacon-patrol uses ephemeral","description":"Deacon patrol cycles run as ephemeral molecules.\n\n## Current Deacon Loop\n\n```\nwhile running:\n check_heartbeat()\n check_mail()\n sleep(interval)\n```\n\n## Molecule-Based Loop\n\n```\nwhile running:\n mol = bd mol bond mol-deacon-patrol-cycle --ephemeral\n execute_cycle(mol):\n check_heartbeat()\n check_mail()\n log_status()\n summary = generate_cycle_summary()\n bd squash mol --summary summary\n sleep(interval)\n```\n\n## Benefits\n\n- Each cycle is tracked\n- Digests show daemon health over time\n- Can query: 'show me patrol cycles from last hour'\n- Crash mid-cycle → ephemeral shows where we were","status":"in_progress","priority":1,"issue_type":"task","assignee":"gastown/rictus","created_at":"2025-12-21T14:34:13.026048-08:00","updated_at":"2025-12-21T18:49:09.575042-08:00","dependencies":[{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:13.026388-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z.8","type":"blocks","created_at":"2025-12-21T14:34:40.672531-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-rana.3","type":"blocks","created_at":"2025-12-21T15:20:27.460976-08:00","created_by":"daemon"}]}
{"id":"gt-3x0z.9","title":"Phase 4.1: mol-deacon-patrol uses ephemeral","description":"Deacon patrol cycles run as ephemeral molecules.\n\n## Current Deacon Loop\n\n```\nwhile running:\n check_heartbeat()\n check_mail()\n sleep(interval)\n```\n\n## Molecule-Based Loop\n\n```\nwhile running:\n mol = bd mol bond mol-deacon-patrol-cycle --ephemeral\n execute_cycle(mol):\n check_heartbeat()\n check_mail()\n log_status()\n summary = generate_cycle_summary()\n bd squash mol --summary summary\n sleep(interval)\n```\n\n## Benefits\n\n- Each cycle is tracked\n- Digests show daemon health over time\n- Can query: 'show me patrol cycles from last hour'\n- Crash mid-cycle → ephemeral shows where we were","status":"in_progress","priority":1,"issue_type":"task","created_at":"2025-12-21T14:34:13.026048-08:00","updated_at":"2025-12-21T19:53:54.042293-08:00","dependencies":[{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z","type":"parent-child","created_at":"2025-12-21T14:34:13.026388-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-3x0z.8","type":"blocks","created_at":"2025-12-21T14:34:40.672531-08:00","created_by":"daemon"},{"issue_id":"gt-3x0z.9","depends_on_id":"gt-rana.3","type":"blocks","created_at":"2025-12-21T15:20:27.460976-08:00","created_by":"daemon"}]}
{"id":"gt-3x1","title":"Update Refinery to use Beads merge queue","description":"Replace branch discovery with Beads queue in the Refinery module:\n\nCurrent (internal/refinery/manager.go):\n- Scans for polecat/* branches\n- Creates MR objects on-the-fly\n\nNew:\n- Pull from Beads: bd ready --type=merge-request\n- Process each MR\n- Close with merge commit: bd close \u003cid\u003e --reason=\"Merged at \u003csha\u003e\"\n- Handle failures: bd update \u003cid\u003e --status=blocked --reason=\"...\"\n\nThe Engineer (agent) becomes Beads-native.\nThe Refinery (module) provides the infrastructure.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-16T23:02:37.96436-08:00","updated_at":"2025-12-19T15:24:39.1231-08:00","closed_at":"2025-12-19T14:47:51.65991-08:00","dependencies":[{"issue_id":"gt-3x1","depends_on_id":"gt-h5n","type":"blocks","created_at":"2025-12-16T23:02:55.812433-08:00","created_by":"daemon"},{"issue_id":"gt-3x1","depends_on_id":"gt-svi","type":"blocks","created_at":"2025-12-16T23:03:12.814463-08:00","created_by":"daemon"}]}
{"id":"gt-3x1.1","title":"Engineer main loop: poll for ready merge-requests","description":"Implement the Engineer's main processing loop.\n\nLoop structure:\n1. Query: bd ready --type=merge-request\n2. If empty: sleep(poll_interval), continue\n3. Select highest priority, oldest MR\n4. Claim: bd update \u003cid\u003e --status=in_progress\n5. Process (delegate to other subtasks)\n6. Repeat\n\nConfiguration:\n- poll_interval: from rig config (default 30s)\n- max_concurrent: from rig config (default 1)\n\nThe loop should be interruptible and handle graceful shutdown.\n\nReference: docs/merge-queue-design.md#engineer-processing-loop","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T13:50:57.022367-08:00","updated_at":"2025-12-18T20:45:17.731441-08:00","closed_at":"2025-12-18T20:14:35.321731-08:00","dependencies":[{"issue_id":"gt-3x1.1","depends_on_id":"gt-3x1","type":"parent-child","created_at":"2025-12-17T13:50:57.024225-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.1","depends_on_id":"gt-svi.1","type":"blocks","created_at":"2025-12-17T13:53:09.832586-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.1","depends_on_id":"gt-svi.2","type":"blocks","created_at":"2025-12-17T13:53:09.9547-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.1","depends_on_id":"gt-h5n.8","type":"blocks","created_at":"2025-12-17T13:53:16.770078-08:00","created_by":"daemon"}]}
{"id":"gt-3x1.2","title":"Fetch and conflict check: git operations for MR","description":"Implement git operations for MR processing.\n\nSteps:\n1. git fetch origin \u003cmr.branch\u003e\n2. git checkout \u003cmr.target\u003e (main or integration/xxx)\n3. git merge --no-commit --no-ff \u003cmr.branch\u003e (test merge)\n4. Check for conflicts\n5. If conflicts: abort and return Failure(conflict, files)\n6. If clean: abort (actual merge in next step)\n\nHelper functions:\n- FetchBranch(branch string) error\n- CheckConflicts(source, target string) ([]string, error)\n\nReference: docs/merge-queue-design.md#process-merge-steps","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T13:50:58.99193-08:00","updated_at":"2025-12-18T20:17:47.781432-08:00","closed_at":"2025-12-18T20:17:47.781432-08:00","dependencies":[{"issue_id":"gt-3x1.2","depends_on_id":"gt-3x1","type":"parent-child","created_at":"2025-12-17T13:50:58.993973-08:00","created_by":"daemon"},{"issue_id":"gt-3x1.2","depends_on_id":"gt-3x1.1","type":"blocks","created_at":"2025-12-17T13:53:10.066159-08:00","created_by":"daemon"}]}
@@ -71,7 +71,7 @@
{"id":"gt-3zg","title":"Verify architecture.md shows correct harness and rig structure","description":"Review architecture.md diagrams:\n- Verify town-level structure shows harness correctly\n- Confirm rig-level mayor/rig/ is shown (it appears to be there at line 197)\n- Check mermaid diagrams match ASCII diagrams\n- Update if any inconsistencies found\n- Cross-reference with new harness.md docs","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T17:15:45.10268-08:00","updated_at":"2025-12-19T12:06:49.800234-08:00","closed_at":"2025-12-19T12:06:49.800234-08:00","dependencies":[{"issue_id":"gt-3zg","depends_on_id":"gt-cr9","type":"blocks","created_at":"2025-12-17T17:15:52.090317-08:00","created_by":"daemon"}]}
{"id":"gt-3zw","title":"Policy beads: config in data plane","description":"Use sentinel/policy beads for configuration instead of external config. Examples: daemon notifications on/off, heartbeat intervals. Config lives in the bead graph, can be toggled by closing/opening policy beads.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-18T18:18:32.857389-08:00","updated_at":"2025-12-18T18:18:32.857389-08:00"}
{"id":"gt-43qg","title":"Test: release command verification","notes":"Released: testing release command","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-19T16:15:30.845537-08:00","updated_at":"2025-12-19T16:15:55.084052-08:00","closed_at":"2025-12-19T16:15:55.084052-08:00"}
{"id":"gt-44wh","title":"Polecats must not create GitHub PRs","description":"Polecats should never use 'gh pr create' or create GitHub pull requests.\n\n## Correct Workflow\n1. Polecat works on polecat/\u003cname\u003e branch\n2. Commits and pushes to origin\n3. Creates beads MR issue (type: merge-request)\n4. Refinery processes the MR and merges to main\n\n## Wrong Workflow\n- Using gh pr create\n- Creating GitHub pull requests directly\n\n## Why\n- Refinery is our merge queue processor\n- GitHub PRs bypass our workflow\n- Beads MRs are the coordination mechanism","status":"in_progress","priority":1,"issue_type":"bug","assignee":"gastown/slit","created_at":"2025-12-21T16:40:33.204449-08:00","updated_at":"2025-12-21T18:05:18.53945-08:00"}
{"id":"gt-44wh","title":"Polecats must not create GitHub PRs","description":"Polecats should never use 'gh pr create' or create GitHub pull requests.\n\n## Correct Workflow\n1. Polecat works on polecat/\u003cname\u003e branch\n2. Commits and pushes to origin\n3. Creates beads MR issue (type: merge-request)\n4. Refinery processes the MR and merges to main\n\n## Wrong Workflow\n- Using gh pr create\n- Creating GitHub pull requests directly\n\n## Why\n- Refinery is our merge queue processor\n- GitHub PRs bypass our workflow\n- Beads MRs are the coordination mechanism","status":"in_progress","priority":1,"issue_type":"bug","created_at":"2025-12-21T16:40:33.204449-08:00","updated_at":"2025-12-21T19:54:00.481393-08:00"}
{"id":"gt-48bs","title":"gt rig reset: clear stale mail on reset/land","description":"## Problem\n\nWhen resetting or landing a rig/town, stale mail messages can confuse agents on startup. Old handoff messages, daemon notifications, and inter-agent mail should be cleaned up as part of reset.\n\n## Current State\n\n- `gt rig reset` exists but doesn't clear mail\n- Stale messages accumulate (e.g., daemon SHUTDOWN messages)\n- Agents may read outdated context on startup\n\n## Proposed Behavior\n\n`gt rig reset` and `gt town reset` should:\n1. Close all open messages (`--type=message`) in the relevant beads\n2. Optionally preserve pinned handoff beads (clear content, keep bead)\n3. Log what was cleaned up\n\n```bash\ngt rig reset gastown # Clears gastown mail\ngt rig reset gastown --mail # Only clear mail, keep other state\ngt town reset # Clears all town-level mail\ngt town reset --all # Clears mail in all rigs too\n```\n\n## Implementation\n\n1. Query `bd list --type=message --status=open`\n2. Close each with reason 'Cleared during reset'\n3. For pinned handoffs: `bd update \u003cid\u003e --description=''` instead of close","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T11:42:17.769674-08:00","updated_at":"2025-12-21T11:27:49.532203-08:00","closed_at":"2025-12-21T11:27:49.532203-08:00","close_reason":"Added --mail flag to gt rig reset"}
{"id":"gt-4eim","title":"gt nudge should accept flexible session identifiers","description":"Currently `gt nudge` requires the exact tmux session name (e.g., `gt-gastown-furiosa`).\n\nIt should also accept:\n- `gastown/furiosa` (rig/polecat format)\n- `furiosa` (polecat name, infer rig from cwd or require if ambiguous)\n\nThe session list command shows `gastown/furiosa` format, but nudge rejects it:\n```\ngt session list → shows 'gastown/furiosa'\ngt nudge gastown/furiosa 'msg' → 'session not found'\ngt nudge gt-gastown-furiosa 'msg' → works\n```\n\nShould normalize all these formats to the tmux session name internally.","status":"in_progress","priority":2,"issue_type":"bug","assignee":"gastown/angharad","created_at":"2025-12-21T15:36:45.013475-08:00","updated_at":"2025-12-21T15:37:59.042119-08:00"}
{"id":"gt-4my","title":"Doctor check: Worker health and stuck detection","description":"Detect and report stuck workers via gt doctor.\n\n## Checks\n\n### WorkerHealthCheck\n- List all active workers (polecats with state=working)\n- Check last activity timestamp for each\n- Flag as potentially stuck if no progress for configurable threshold (default: 30 min)\n- Check if Witness is running for the rig\n- Verify Witness last heartbeat time\n\n### Stuck Detection Criteria\n- Polecat state=working but session not running\n- Polecat state=working but output unchanged for threshold\n- Witness not responding to health checks\n- Multiple polecats in same rig all stuck\n\n## Output\n\n```\n[WARN] Workers in rig 'wyvern' may be stuck:\n - Toast: working for 45m, no recent output\n - Capable: working for 52m, session not found\n - Witness: last heartbeat 20m ago\n \n Suggestions:\n - gt witness status wyvern\n - gt capture wyvern/Toast 50\n - gt stop --rig wyvern (kill all)\n```\n\n## Auto-Fix\n\nCannot auto-fix stuck workers (risk of data loss), but can:\n- Restart Witness daemon if crashed\n- Send warning mail to Mayor","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-15T23:17:59.265062-08:00","updated_at":"2025-12-16T17:24:34.882466-08:00","dependencies":[{"issue_id":"gt-4my","depends_on_id":"gt-f9x.4","type":"blocks","created_at":"2025-12-15T23:19:05.565606-08:00","created_by":"daemon"},{"issue_id":"gt-4my","depends_on_id":"gt-7ik","type":"blocks","created_at":"2025-12-17T15:44:42.068149-08:00","created_by":"daemon"}]}
@@ -330,7 +330,7 @@
{"id":"gt-iep9.7","title":"loop-or-exit","description":"Decision: burn and loop if context low, exit for respawn if context high.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T17:51:04.755716-08:00","updated_at":"2025-12-21T17:51:04.755716-08:00","dependencies":[{"issue_id":"gt-iep9.7","depends_on_id":"gt-iep9","type":"parent-child","created_at":"2025-12-21T17:51:04.75713-08:00","created_by":"daemon"}]}
{"id":"gt-ih0s","title":"Fix blocking bugs (gt-dsfi, gt-n7z7, gm-c6b)","description":"Fix bugs blocking Witness functionality:\n\n1. gt-dsfi: handoff deadlock\n - Polecats hang when trying to exit\n - Blocks shutdown request handler\n\n2. gt-n7z7: refinery foreground race condition \n - Sometimes detects parent as already running\n - Blocks reliable Refinery startup\n\n3. gm-c6b: mail coordination\n - Cross-rig mail should use town-level database\n - Affects Witness \u003c-\u003e Mayor communication\n\nThese should be fixed early as they'll block integration testing.","notes":"Fixed gt-dsfi and gt-n7z7. Issue gm-c6b not found in database.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T03:14:25.803822-08:00","updated_at":"2025-12-20T07:47:50.444171-08:00","closed_at":"2025-12-20T07:47:50.444171-08:00","dependencies":[{"issue_id":"gt-ih0s","depends_on_id":"gt-53w6","type":"parent-child","created_at":"2025-12-20T03:14:37.430142-08:00","created_by":"daemon"}]}
{"id":"gt-iib","title":"Architecture: Decentralized rig structure with per-rig agents","description":"## Decision\n\nAdopt decentralized architecture where each rig contains all its agents (mayor/, witness/, refinery/, polecats/) rather than centralizing mayor clones at town level.\n\n## Town Level Structure\n\n```\n~/ai/ # Town root\n├── config/ # Town config (VISIBLE, not hidden)\n│ ├── town.json # {\"type\": \"town\"}\n│ ├── rigs.json # Registry of managed rigs\n│ └── federation.json # Wasteland config (future)\n│\n├── mayor/ # Mayor's HOME at town level\n│ ├── CLAUDE.md\n│ ├── mail/inbox.jsonl\n│ └── state.json\n│\n└── \u003crigs\u003e/ # Managed projects\n```\n\n## Rig Level Structure (e.g., wyvern)\n\n```\nwyvern/ # Rig = clone of project repo\n├── .git/info/exclude # Gas Town adds: polecats/ refinery/ witness/ mayor/\n├── .beads/ # Beads (if project uses it)\n├── [project files] # Clean project code on main\n│\n├── polecats/ # Worker clones\n│ └── \u003cname\u003e/ # Each is a git clone\n│\n├── refinery/\n│ ├── rig/ # Refinery's clone\n│ ├── state.json\n│ └── mail/inbox.jsonl\n│\n├── witness/ # NEW: Per-rig pit boss\n│ ├── rig/ # Witness's clone\n│ ├── state.json\n│ └── mail/inbox.jsonl\n│\n└── mayor/\n ├── rig/ # Mayor's clone for this rig\n └── state.json\n```\n\n## Key Decisions\n\n1. **Visible config dir**: `config/` not `.gastown/` (models don't find hidden dirs)\n2. **Witness per-rig**: Each rig has its own Witness (pit boss) with its own clone\n3. **Mayor decentralized**: Mayor's clones live IN each rig at `\u003crig\u003e/mayor/rig/`\n4. **Minimal invasiveness**: Only `.git/info/exclude` modified, no commits to project\n5. **Clone subdir name**: Keep `rig/` for consistency (refinery/rig/, witness/rig/, mayor/rig/)\n\n## Role Detection\n\n- Town root or mayor/ → Mayor (town level)\n- Rig root → Mayor (canonical main)\n- \u003crig\u003e/mayor/rig/ → Mayor (rig-specific)\n- \u003crig\u003e/refinery/rig/ → Refinery\n- \u003crig\u003e/witness/rig/ → Witness\n- \u003crig\u003e/polecats/\u003cname\u003e/ → Polecat\n\n## Migration from PGT\n\n- `mayor/rigs/\u003crig\u003e/` → `\u003crig\u003e/mayor/rig/`\n- `\u003crig\u003e/town/` → eliminated (rig root IS the clone)\n- Add `witness/` to each rig","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-15T19:21:19.913928-08:00","updated_at":"2025-12-15T19:21:40.461186-08:00","closed_at":"2025-12-15T19:21:40.461186-08:00","dependencies":[{"issue_id":"gt-iib","depends_on_id":"gt-u1j","type":"blocks","created_at":"2025-12-15T19:21:40.374551-08:00","created_by":"daemon"}]}
{"id":"gt-iu23","title":"Polecat doesn't auto-start after spawn inject - requires manual nudge","description":"## Problem\n\nAfter `gt spawn --issue \u003cid\u003e --create`, the polecat session shows Claude Code started with the injected prompt, but Claude doesn't begin processing. The prompt just sits there until manually nudged.\n\n## Evidence\n\n```\n$ gt spawn --issue gt-rixa --rig gastown --create\n...\n✓ Session started. Attach with: gt session at gastown/furiosa\n Polecat nudged to start working\n Witness notified to monitor startup\n```\n\nSession shows:\n```\n\u003e You have a work assignment. Run 'gt mail inbox' to see it, then start\n working on issue gt-rixa.\n\n ⏵⏵ bypass permissions on (shift+tab to cycle)\n```\n\nBut Claude doesn't respond. Manual nudge required:\n```\n$ gt nudge gt-gastown-furiosa \"Please start working...\"\n```\n\nAfter nudge, polecat immediately starts working correctly.\n\n## Hypothesis\n\nThe spawn inject happens before Claude Code is fully initialized. The text arrives in the input buffer, but Claude hasn't started listening yet. By the time Claude starts, the input has already been 'consumed' as initial prompt text but not submitted.\n\n## Resolution Plan\n\nThis will be solved by the **polecat molecule workflow** (mol-polecat-work), which provides structured lifecycle management. The molecule approach handles startup, work, and shutdown as discrete steps with proper state tracking.\n\n**Blocked on**: beads/crew/dave completing ephemeral molecules (bd mol bond, ephemeral beads repo).\n\n## Workaround\n\nFor now, use `gt nudge` if a polecat doesn't start within ~30 seconds of spawn.","status":"in_progress","priority":1,"issue_type":"bug","assignee":"gastown/nux","created_at":"2025-12-21T14:06:27.375686-08:00","updated_at":"2025-12-21T18:04:58.838491-08:00"}
{"id":"gt-iu23","title":"Polecat doesn't auto-start after spawn inject - requires manual nudge","description":"## Problem\n\nAfter `gt spawn --issue \u003cid\u003e --create`, the polecat session shows Claude Code started with the injected prompt, but Claude doesn't begin processing. The prompt just sits there until manually nudged.\n\n## Evidence\n\n```\n$ gt spawn --issue gt-rixa --rig gastown --create\n...\n✓ Session started. Attach with: gt session at gastown/furiosa\n Polecat nudged to start working\n Witness notified to monitor startup\n```\n\nSession shows:\n```\n\u003e You have a work assignment. Run 'gt mail inbox' to see it, then start\n working on issue gt-rixa.\n\n ⏵⏵ bypass permissions on (shift+tab to cycle)\n```\n\nBut Claude doesn't respond. Manual nudge required:\n```\n$ gt nudge gt-gastown-furiosa \"Please start working...\"\n```\n\nAfter nudge, polecat immediately starts working correctly.\n\n## Hypothesis\n\nThe spawn inject happens before Claude Code is fully initialized. The text arrives in the input buffer, but Claude hasn't started listening yet. By the time Claude starts, the input has already been 'consumed' as initial prompt text but not submitted.\n\n## Resolution Plan\n\nThis will be solved by the **polecat molecule workflow** (mol-polecat-work), which provides structured lifecycle management. The molecule approach handles startup, work, and shutdown as discrete steps with proper state tracking.\n\n**Blocked on**: beads/crew/dave completing ephemeral molecules (bd mol bond, ephemeral beads repo).\n\n## Workaround\n\nFor now, use `gt nudge` if a polecat doesn't start within ~30 seconds of spawn.","status":"in_progress","priority":1,"issue_type":"bug","created_at":"2025-12-21T14:06:27.375686-08:00","updated_at":"2025-12-21T19:53:46.940942-08:00"}
{"id":"gt-iua8","title":"Merge: gt-frs","description":"branch: polecat/Slit\ntarget: main\nsource_issue: gt-frs\nrig: gastown","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T16:30:05.529099-08:00","updated_at":"2025-12-19T18:26:14.104887-08:00","closed_at":"2025-12-19T17:48:44.654109-08:00"}
{"id":"gt-j4nu","title":"Merge: gt-g44u.3","description":"branch: polecat/Ace\ntarget: main\nsource_issue: gt-g44u.3\nrig: gastown","status":"closed","priority":0,"issue_type":"merge-request","created_at":"2025-12-19T16:14:52.767156-08:00","updated_at":"2025-12-19T17:35:36.663796-08:00","closed_at":"2025-12-19T17:35:36.663796-08:00"}
{"id":"gt-j5tk","title":"Work assignment messages should auto-close on completion","description":"When a polecat completes work on an issue, the work assignment message (msg-type:task) stays open. Found 7 stale work assignments in gastown after swarm completed.\n\nProposal: When bd close is called on an issue, auto-close any work assignment messages that reference that issue in their body.\n\nAlternative: Work assignment messages could use a different lifecycle - perhaps they should be acked (closed) when the polecat starts working, not when they finish.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-20T03:12:28.403974-08:00","updated_at":"2025-12-20T03:12:28.403974-08:00"}
@@ -419,7 +419,7 @@
{"id":"gt-rana.1","title":"Phase 1.1: Attachment field on pinned beads","description":"Add attached_molecule field to pinned bead schema.\n\n## Schema Change\nAdd to handoff/pinned bead issues:\n- attached_molecule: string (root issue ID of attached mol)\n- attached_at: timestamp\n\n## Implementation\n- Update beads Issue struct if needed\n- Or: use labels/metadata field\n- Ensure bd show displays attachment info\n\n## Acceptance\n- Can set/clear attachment on a bead\n- bd show displays attachment status","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T13:38:34.251531-08:00","updated_at":"2025-12-21T15:51:01.902014-08:00","closed_at":"2025-12-21T15:51:01.902014-08:00","close_reason":"Implemented attachment fields: AttachMolecule, DetachMolecule, GetAttachment APIs","dependencies":[{"issue_id":"gt-rana.1","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:38:34.253378-08:00","created_by":"daemon"}]}
{"id":"gt-rana.2","title":"Phase 1.2: Daemon attachment detection","description":"Daemon polls Deacon's pinned bead to detect naked state.\n\n## Implementation\n- Daemon knows Deacon's pinned bead ID\n- Every heartbeat cycle: bd show \u003cpinned\u003e --json\n- Parse attached_molecule field\n- If null/empty: Deacon is naked\n\n## Actions on Naked\n- Spawn mol-deacon-patrol\n- Attach to Deacon's pinned\n- Nudge Deacon to start\n\n## Failsafes\n- Keepalive file monitoring\n- Stale detection (\u003e10min no progress)\n- Force nudge on stale\n\nDepends: gt-rana.1","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/nux","created_at":"2025-12-21T13:38:53.520213-08:00","updated_at":"2025-12-21T17:28:16.072229-08:00","closed_at":"2025-12-21T17:28:16.072229-08:00","close_reason":"Already implemented: checkDeaconAttachment() in daemon.go polls pinned bead, detects naked state, spawns patrol, attaches molecule, and nudges Deacon. Failsafes include heartbeat monitoring and stale detection with backoff.","dependencies":[{"issue_id":"gt-rana.2","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:38:53.521672-08:00","created_by":"daemon"},{"issue_id":"gt-rana.2","depends_on_id":"gt-rana.1","type":"blocks","created_at":"2025-12-21T13:39:11.333008-08:00","created_by":"daemon"}]}
{"id":"gt-rana.3","title":"Phase 1.3: mol-deacon-patrol definition","description":"Define the Deacon patrol molecule in builtin_molecules.go.\n\n## Steps\n1. inbox-check - Handle callbacks from agents\n2. health-scan - Ping Witnesses and Refineries\n3. plugin-run - Execute registered plugins\n4. orphan-check - Find abandoned work\n5. session-gc - Clean dead sessions\n6. context-check - Check own context limit\n7. loop-or-exit - Burn and let daemon respawn, or exit if context high\n\n## Implementation\n- Add DeaconPatrolMolecule() to builtin_molecules.go\n- Add to BuiltinMolecules() list\n- Test with bd mol show mol-deacon-patrol","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/dementus","created_at":"2025-12-21T13:38:54.555938-08:00","updated_at":"2025-12-21T15:39:16.769062-08:00","closed_at":"2025-12-21T15:39:16.769062-08:00","close_reason":"Closed","dependencies":[{"issue_id":"gt-rana.3","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:38:54.55744-08:00","created_by":"daemon"}]}
{"id":"gt-rana.4","title":"Phase 1.4: Basic patrol runner in Deacon","description":"Deacon CLAUDE.md and prime context for patrol execution.\n\n## Deacon Context\n- Update Deacon CLAUDE.md with patrol instructions\n- On wake: check pinned bead for attachment\n- If attached: resume molecule from current step\n- Execute steps, close each when done\n- On final step: burn molecule, go naked\n\n## gt prime Enhancement\n- Detect if agent has attached molecule\n- Show molecule progress in prime output\n- Include patrol-specific instructions\n\nDepends: gt-rana.3","status":"in_progress","priority":1,"issue_type":"task","assignee":"gastown/furiosa","created_at":"2025-12-21T13:38:55.457748-08:00","updated_at":"2025-12-21T18:48:48.157473-08:00","dependencies":[{"issue_id":"gt-rana.4","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:38:55.459852-08:00","created_by":"daemon"},{"issue_id":"gt-rana.4","depends_on_id":"gt-rana.3","type":"blocks","created_at":"2025-12-21T13:39:11.402784-08:00","created_by":"daemon"},{"issue_id":"gt-rana.4","depends_on_id":"gt-3x0z.8","type":"blocks","created_at":"2025-12-21T15:20:16.297449-08:00","created_by":"daemon"}]}
{"id":"gt-rana.4","title":"Phase 1.4: Basic patrol runner in Deacon","description":"Deacon CLAUDE.md and prime context for patrol execution.\n\n## Deacon Context\n- Update Deacon CLAUDE.md with patrol instructions\n- On wake: check pinned bead for attachment\n- If attached: resume molecule from current step\n- Execute steps, close each when done\n- On final step: burn molecule, go naked\n\n## gt prime Enhancement\n- Detect if agent has attached molecule\n- Show molecule progress in prime output\n- Include patrol-specific instructions\n\nDepends: gt-rana.3","status":"closed","priority":1,"issue_type":"task","assignee":"gastown/furiosa","created_at":"2025-12-21T13:38:55.457748-08:00","updated_at":"2025-12-21T18:53:30.80872-08:00","closed_at":"2025-12-21T18:53:30.80872-08:00","close_reason":"Fixed Deacon patrol commands: gt mol → bd mol run, gt mol burn → bd close. Prime already detects molecules.","dependencies":[{"issue_id":"gt-rana.4","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:38:55.459852-08:00","created_by":"daemon"},{"issue_id":"gt-rana.4","depends_on_id":"gt-rana.3","type":"blocks","created_at":"2025-12-21T13:39:11.402784-08:00","created_by":"daemon"},{"issue_id":"gt-rana.4","depends_on_id":"gt-3x0z.8","type":"blocks","created_at":"2025-12-21T15:20:16.297449-08:00","created_by":"daemon"}]}
{"id":"gt-rana.5","title":"Phase 2: Quiescent agents (Witness, Refinery)","description":"Enable Witness and Refinery to sleep until triggered.\n\n## Scope\n- Wake triggers: gt spawn, MR submit, mail, Deacon ping\n- Wake SLA: \u003c1 minute\n- mol-witness-patrol and mol-refinery-patrol definitions\n- Quiescent entry/exit protocol\n\n## Implementation\n- Kill tmux session on quiescent entry\n- Preserve sandbox (worktree, state files)\n- Restart session on wake trigger\n- Agent checks pinned, spawns default patrol if naked\n\nDepends: Phase 1 complete","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T13:39:12.926917-08:00","updated_at":"2025-12-21T13:39:12.926917-08:00","dependencies":[{"issue_id":"gt-rana.5","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:39:12.928741-08:00","created_by":"daemon"},{"issue_id":"gt-rana.5","depends_on_id":"gt-rana.4","type":"blocks","created_at":"2025-12-21T13:39:23.067953-08:00","created_by":"daemon"}]}
{"id":"gt-rana.6","title":"Phase 3: Callbacks and plugins","description":"Mail-based callback protocol and plugin surface.\n\n## Callbacks\n- Polecat → Witness: shutdown requests\n- Witness → Deacon: escalations, status\n- Crew → Deacon: recycle requests\n- Deacon → Mayor: escalations\n\n## Plugins\n- .beads/plugins.yaml registry\n- Cooldown tracking\n- Plugin runner in deacon patrol\n\nDepends: Phase 2","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T13:39:14.120827-08:00","updated_at":"2025-12-21T13:39:14.120827-08:00","dependencies":[{"issue_id":"gt-rana.6","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:39:14.122713-08:00","created_by":"daemon"},{"issue_id":"gt-rana.6","depends_on_id":"gt-rana.5","type":"blocks","created_at":"2025-12-21T13:39:23.138268-08:00","created_by":"daemon"}]}
{"id":"gt-rana.7","title":"Phase 4: Polish and observability","description":"Production readiness.\n\n## Commands\n- gt patrol status - Show patrol state for all agents\n- gt patrol history - Recent patrol activity\n\n## Observability\n- Metrics collection\n- Alert thresholds\n- Dashboard (optional)\n\n## Tuning\n- Cooldown optimization\n- Wake SLA verification\n- Error threshold tuning\n\nDepends: Phase 3","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-21T13:39:15.421608-08:00","updated_at":"2025-12-21T13:39:15.421608-08:00","dependencies":[{"issue_id":"gt-rana.7","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:39:15.423245-08:00","created_by":"daemon"},{"issue_id":"gt-rana.7","depends_on_id":"gt-rana.6","type":"blocks","created_at":"2025-12-21T13:39:23.209512-08:00","created_by":"daemon"}]}