bd sync: 2025-12-24 13:00:09

.beads/issues.jsonl

@@ -597,7 +597,7 @@
 {"id":"gt-in3x","title":"gt spawn --continue for resuming parked molecules","description":"Add `--continue` flag to gt spawn for resuming parked molecules:\n\n```bash\ngt spawn --continue gt-mol-root\n```\n\nThis:\n1. Finds molecule root\n2. Verifies molecule is in \"parked\" state (in_progress, no assignee)\n3. Checks external deps are now satisfied\n4. Spawns polecat with molecule context\n5. Polecat reads handoff mail and continues from blocked step\n\nPart of cross-project dependency system.\nSee: docs/cross-project-deps.md\n\nDepends on: gt-zniu (gt park)\nDepends on Beads: bd-zmmy (bd ready resolution)","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:39:13.154462-08:00","updated_at":"2025-12-21T22:39:13.154462-08:00","dependencies":[{"issue_id":"gt-in3x","depends_on_id":"gt-zniu","type":"blocks","created_at":"2025-12-21T22:39:44.707231-08:00","created_by":"daemon"}]}
 {"id":"gt-in7b","title":"gt sling: nudge crew/mayor if session is running","description":"When slinging to crew or mayor, if they have an active tmux session, send a nudge notification so they know work has landed on their hook.\n\nCurrently only slingToPolecat nudges (lines 514-521 in internal/cmd/sling.go).\n\nMissing nudge in:\n- slingToCrew (line ~669)\n- slingToMayor (line ~876)\n\nNOT applicable to patrol-based agents (witness, refinery, deacon) - they run on cycles and pick up work via hook check, not interactive nudge.\n\nImplementation:\n1. For crew: need to determine session name (e.g., gastown-crew-max)\n2. Check if session running via tmux\n3. If running, call t.NudgeSession() with appropriate message","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-23T15:56:22.30857-08:00","updated_at":"2025-12-23T15:57:01.19806-08:00"}
 {"id":"gt-ingm","title":"Molecular Chemistry Cleanup: Fix inaccurate molecule depictions","description":"## The Correct Model\n\nAccording to molecular-chemistry.md, the hierarchy is:\n\nFormula (YAML DSL) --cook--\u003e Proto (template beads) --pour/wisp--\u003e Mol/Wisp (actual work)\n\n- **Formulas**: YAML files in .beads/formulas/ that define workflow structure\n- **Cook**: Transform formula to proto beads (with [template] label)\n- **Proto**: Template beads with child beads for each step\n- **Pour**: Proto to Mol (persistent liquid)\n- **Wisp**: Proto to Wisp (ephemeral vapor)\n\n## What's Wrong\n\nWe have legacy code and docs that use the OLD model where molecules are defined\nin Go code as structs with embedded markdown, instead of as formula YAML cooked into proto beads.\n\n---\n\n## MAJOR ISSUES\n\n### 1. Go Code: molecules_*.go (DELETE OR REWRITE)\n\n**Files:**\n- internal/beads/builtin_molecules.go\n- internal/beads/molecules_patrol.go (19KB!)\n- internal/beads/molecules_session.go (13KB)\n- internal/beads/molecules_work.go (13KB)\n\n**Problem:** Defines molecules as Go structs with embedded markdown descriptions.\nThis is completely wrong. Molecules should come from:\n1. Formula YAML files cooked into proto beads\n2. Proto beads with child beads for each step\n\n**Used by:**\n- install.go:seedBuiltinMolecules() - seeds during install\n- catalog.go - includes in catalog\n- molecule_list.go:ExportBuiltinMolecules()\n\n**Fix:** Delete these files. Create formula YAML files instead. Update seeding\nto cook formulas into protos.\n\n### 2. Role Templates: Steps Listed in Markdown (REWRITE)\n\n**Files:**\n- prompts/roles/deacon.md - Lists 7 patrol steps\n- prompts/roles/refinery.md - Lists 10 patrol steps\n- prompts/roles/witness.md - Procedural \"Heartbeat Protocol\" (not molecule-based!)\n- prompts/roles/polecat.md - References molecule steps\n\n**Problem:** The steps are listed in the markdown template, but they should be\ndiscovered from the proto beads via bd mol current. Templates should say\n\"check your hook, run your patrol\" without duplicating step definitions.\n\n**Fix:** Templates should describe HOW to run a patrol (propulsion principle,\nbd mol current, bd close --continue), not WHAT the steps are.\n\n### 3. Protos are Empty/Missing (CREATE)\n\n**Current state:**\n- gt-iep9 (mol-deacon-patrol) - Only 2 child steps\n- gt-qflq (mol-witness-patrol) - EMPTY (0 children)\n- mol-refinery-patrol - DOESN'T EXIST\n\n**Fix:** Create formula YAML files for each patrol, cook them into proper protos\nwith child beads for each step.\n\n---\n\n## MEDIUM ISSUES\n\n### 4. Command Confusion: spawn vs pour/wisp\n\n**Files:**\n- prompts/roles/deacon.md - Uses bd mol spawn ... --assignee=deacon\n- prompts/roles/refinery.md - Uses bd mol spawn ... --wisp\n- Various docs\n\n**Problem:** The correct commands per molecular-chemistry.md:\n- bd pour proto - Create persistent mol (liquid)\n- bd wisp proto - Create ephemeral wisp (vapor)\n- bd mol spawn - Old/deprecated\n\n**Fix:** Update all references to use bd wisp for patrols, bd pour for\npersistent work.\n\n### 5. Command Confusion: gt mol vs bd mol\n\n**Files:** Various docs and templates\n\n**Problem:** Some use gt mol status, others bd mol status. Need to clarify:\n- gt mol = Gas Town wrapper (if it exists, what does it add?)\n- bd mol = Beads molecule commands (authoritative)\n\n**Fix:** Audit and standardize. If gt mol is a thin wrapper, remove it.\n\n### 6. polecat-wisp-architecture.md (UPDATE OR DELETE)\n\n**File:** docs/polecat-wisp-architecture.md\n\n**Problem:** References adding molecules to builtin_molecules.go - old model.\n\n### 7. manager.go (UPDATE)\n\n**File:** internal/rig/manager.go\n\n**Problem:** Comment references \"subset of builtin_molecules.go for seeding\"\n\n---\n\n## IMPLEMENTATION ORDER\n\n1. **Create formula YAML files** for the 3 patrol molecules:\n   - mol-deacon-patrol.formula.yaml\n   - mol-witness-patrol.formula.yaml\n   - mol-refinery-patrol.formula.yaml\n\n2. **Implement bd cook** if not already working to create protos from formulas\n\n3. **Cook the formulas** into proto beads with proper child beads\n\n4. **Update role templates** to use propulsion principle without step lists\n\n5. **Delete molecules_*.go** once formulas are working\n\n6. **Update install.go** to cook formulas instead of seeding Go structs\n\n7. **Audit gt mol vs bd mol** and standardize","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-24T12:37:49.601971-08:00","updated_at":"2025-12-24T12:37:49.601971-08:00"}
-{"id":"gt-ingm.1","title":"Create patrol formula YAML files","description":"Create formula YAML files for:\n- mol-deacon-patrol.formula.yaml\n- mol-witness-patrol.formula.yaml  \n- mol-refinery-patrol.formula.yaml\n\nUse the step definitions currently in molecules_patrol.go as reference.\nStore in .beads/formulas/","status":"in_progress","priority":1,"issue_type":"task","created_at":"2025-12-24T12:38:10.472804-08:00","updated_at":"2025-12-24T12:56:28.825557-08:00"}
+{"id":"gt-ingm.1","title":"Create patrol formula YAML files","description":"Create formula YAML files for:\n- mol-deacon-patrol.formula.yaml\n- mol-witness-patrol.formula.yaml  \n- mol-refinery-patrol.formula.yaml\n\nUse the step definitions currently in molecules_patrol.go as reference.\nStore in .beads/formulas/","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-24T12:38:10.472804-08:00","updated_at":"2025-12-24T12:59:44.504798-08:00","closed_at":"2025-12-24T12:59:44.504798-08:00","close_reason":"Created 4 patrol formula YAML files in .beads/formulas/"}
 {"id":"gt-ingm.2","title":"Cook patrol formulas into proto beads","description":"Use bd cook to transform formula YAML into proto beads with proper child beads for each step.\n\nVerify with bd mol show that protos have all children.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-24T12:38:11.762962-08:00","updated_at":"2025-12-24T12:38:11.762962-08:00","dependencies":[{"issue_id":"gt-ingm.2","depends_on_id":"gt-ingm.1","type":"blocks","created_at":"2025-12-24T12:38:23.880593-08:00","created_by":"daemon"}]}
 {"id":"gt-ingm.3","title":"Delete molecules_*.go files","description":"Remove legacy Go-defined molecules:\n- internal/beads/builtin_molecules.go\n- internal/beads/molecules_patrol.go\n- internal/beads/molecules_session.go\n- internal/beads/molecules_work.go\n\nUpdate install.go to cook formulas instead of seeding Go structs.\nUpdate catalog.go if needed.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-24T12:38:13.028833-08:00","updated_at":"2025-12-24T12:38:13.028833-08:00","dependencies":[{"issue_id":"gt-ingm.3","depends_on_id":"gt-ingm.2","type":"blocks","created_at":"2025-12-24T12:38:23.964643-08:00","created_by":"daemon"}]}
 {"id":"gt-ingm.4","title":"Rewrite role templates without step lists","description":"Update:\n- prompts/roles/deacon.md\n- prompts/roles/refinery.md\n- prompts/roles/witness.md\n\nTemplates should describe HOW to run patrols (propulsion principle, bd mol current, bd close --continue) not WHAT the steps are. Steps come from proto beads.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-24T12:38:14.388135-08:00","updated_at":"2025-12-24T12:38:14.388135-08:00","dependencies":[{"issue_id":"gt-ingm.4","depends_on_id":"gt-ingm.2","type":"blocks","created_at":"2025-12-24T12:38:24.049212-08:00","created_by":"daemon"}]}