CRITICAL FIX: Both `gt done` and `gt mq submit` were creating MR
records without pushing the branch to origin first. When polecat
worktrees were deleted, the unpushed branches were lost forever.
This caused 12 MQ items to become orphaned - merge requests existed
but their branches had vanished.
The fix adds a mandatory `git push origin <branch>` before creating
the MR record. If push fails, the MR is not created.
Fixes: gt-aqku
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Updates Deacon CLAUDE.md template with patrol execution instructions:
- Patrol molecule workflow (mol-deacon-patrol)
- Startup protocol: check for attached molecule, resume or bond
- Patrol execution loop: execute steps, close, loop or exit
- Nondeterministic idempotence for handoff
Enhances gt prime for Deacon:
- Adds patrol status section showing attached/naked state
- Shows molecule progress when patrol is in progress
- Includes Deacon-specific startup directive
Also adds standalone prompts/roles/deacon.md for reference.
Closes: gt-rana.4
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Added comprehensive CLI reference documentation for the three molecule
lifecycle commands:
- bd mol bond: Instantiate proto into Mol (durable) or Wisp (ephemeral)
- bd mol squash: Complete molecule and generate digest
- bd mol burn: Abandon molecule without digest
Includes argument tables, behavior descriptions, examples, and a
lifecycle diagram showing the steam engine metaphor mapping.
Closes: gt-odvf
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add visual diagram showing Proto → Mol/Wisp → Digest state transitions
with the "states of matter" metaphor (crystal → liquid/gas → distillate).
Document when to use Mol (durable) vs Wisp (ephemeral) based on audit
requirements and work importance.
Closes: gt-c6zs
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When --molecule is specified with gt spawn:
- Generate ephemeral instance ID (eph-abc123 format)
- Ensure .beads-ephemeral/ directory exists and is initialized
- Create ephemeral parent issue linking back to source issue
- Instantiate molecule steps in ephemeral beads
- Include ephemeral context in work assignment mail
This implements gt-3x0z.4 (Phase 2.1: gt spawn --molecule bonds in ephemeral).
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add gt doctor checks for ephemeral beads repos:
- ephemeral-exists: Verify .beads-ephemeral/ exists for each rig (fixable)
- ephemeral-git: Verify it's a valid git repo (fixable)
- ephemeral-orphans: Detect molecules >24h old (needs manual review)
- ephemeral-size: Warn if repo >100MB
- ephemeral-stale: Detect molecules with no activity in last hour
Implements gt-3x0z.3.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implement AttachmentFields to track molecule attachments on pinned/handoff beads:
- AttachedMolecule: root issue ID of attached molecule
- AttachedAt: timestamp when attached
API:
- AttachMolecule(pinnedBeadID, moleculeID) - attach
- DetachMolecule(pinnedBeadID) - detach
- GetAttachment(pinnedBeadID) - query
- ParseAttachmentFields(issue) - parse from description
- FormatAttachmentFields(fields) - format for description
Includes comprehensive tests for parsing and API.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Update .beads-ephemeral/ to .beads-wisp/ per beads v0.33.1:
- Renamed initEphemeralBeads to initWispBeads
- Changed directory from .beads-ephemeral/ to .beads-wisp/
- Changed config from ephemeral: true to wisp: true
- Updated help text and output messages
- Updated tests
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
During rig initialization, now creates a .beads-ephemeral/ directory:
- Initialized as a git repo (for local versioning)
- Contains config.yaml with ephemeral: true
- Automatically added to rig .gitignore
This provides a local-only beads database for runtime tracking of
wisps and molecules, separate from the synced .beads/ database.
Closes gt-3x0z.1
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Witness shows polecat count under management (👁 N polecats)
- Refinery shows MQ length and processing status (🏭 MQ: N or 🏭 idle)
- Both show mail count when messages pending
Closes: gt-bd2l, gt-zayu
Define the Deacon patrol molecule in builtin_molecules.go with 7 steps:
1. inbox-check - Handle callbacks from agents
2. health-scan - Ping Witnesses and Refineries
3. plugin-run - Execute registered plugins
4. orphan-check - Find abandoned work (uses wisp terminology)
5. session-gc - Clean dead sessions and wisp artifacts
6. context-check - Check own context limit
7. loop-or-exit - Burn and let daemon respawn, or exit if context high
Added DeaconPatrolMolecule() to BuiltinMolecules() list and added
corresponding test in builtin_molecules_test.go.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
