feat(doctor): add count-based database size check
Adds CheckDatabaseSize (Check 29) that warns when closed issues exceed a configurable threshold (default: 5000). The check is informational only - no auto-fix since pruning is destructive.
Also improves fix guidance for sync-branch hook compatibility and legacy JSONL filename checks.
PR #724 by @rsnodgrass
Jira CLIs use --resolution flag (go-jira, jira-cli). Adding this as a
hidden alias improves agent ergonomics - LLMs have a prior for this flag.
Follows same pattern as --body alias for --description (GitHub CLI).
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
External dependencies (external:<project>:<capability>) reference issues in
other projects and are expected to not exist in the local issues table.
The orphan check now excludes these with: AND d.depends_on_id NOT LIKE 'external:%'
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add async gates - coordination primitives for agents to wait on external events
like CI completion, PR merges, timers, or human approval.
Changes:
- Add 'gate' issue type to types.go with gate-specific fields:
- AwaitType: condition type (gh:run, gh:pr, timer, human, mail)
- AwaitID: condition identifier
- Timeout: max wait duration
- Waiters: mail addresses to notify when gate clears
- Add SQLite migration 027_gate_columns for new fields
- Update all SQLite storage queries to handle gate fields
- Add bd gate commands: create, show, list, close, wait
- All commands support --json output and --no-daemon mode
Closes: bd-2v0f, bd-lz49, bd-u66e
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds manual publishing options for releases:
- --publish-npm: Publish @beads/bd to npm registry
- --publish-pypi: Publish beads-mcp to PyPI
- --publish-all: Shorthand for both
Note: CI already handles publishing automatically when tags are pushed.
These flags are for manual releases or when CI publishing fails.
- Add _ = prefix for ignored Close/Remove return values
- Fix unused cmd parameter in runMoleculeReady
- Add nolint:misspell for intentional British "cancelled" spelling
- Update comments to use US spelling where not intentional
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds release notes for v0.35.0 including:
- Dynamic molecule bonding with --ref flag
- bd activity command for real-time state feed
- waits-for dependency type for fanout gates
- Parallel step detection for molecules
- bd list --parent flag
- Molecule navigation commands
- Performance indexes and bug fixes
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