Remove ClearDirtyIssues() which had a race condition that could lose
dirty issues if export failed partway through. All callers now use
ClearDirtyIssuesByID() which only clears specific exported issues.
- Remove from Storage interface
- Remove from SQLite and Memory implementations
- Update 6 test call sites to use ClearDirtyIssuesByID()
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds "Dependencies: Think Needs, Not Before" section with the
WRONG/RIGHT example pair to help agents avoid the temporal
language trap that inverts dependency direction.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds a "Writing Self-Contained Issues" section to the onboarding output
that instructs AI agents to create fully context-independent issues.
Includes required elements (summary, files, steps, examples) and shows
good vs bad examples.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- bd-06px: Add --no-git-history flag to import command for sync subprocess compatibility
- bd-0zp7: Add missing hook calls (EventMessage in mail reply, EventClose in mail ack)
- bd-hy9p: Implement --body-file and --description-file flags for reading descriptions from files
Also closed stale issues that were already fixed:
- bd-0d5p: macOS test timeout (already fixed with SysProcAttr)
- bd-7yg: Merge driver placeholders (already using correct %A %O %A %B)
- bd-4ri: Test deadlock (test passes in 0.04s now)
- bd-b3og: TestImportBugIntegration (test no longer exists)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Root cause: Previous fix only cleaned beads-sync branch, not main.
During 3-way merge, orphans were re-introduced from main.
This export is from clean DB (0 orphaned issues).
Also force-resetting beads-sync to match.
Adds back third-party tools removed in succinct README PR.
Includes beads.el Emacs package (closes#610).
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Three changes to fix deleted issues resurrecting during bd sync:
1. daemon handleDelete now uses CreateTombstone instead of DeleteIssue
- internal/rpc/server_issues_epics.go
2. sync.go exportToJSONL now includes IncludeTombstones:true
- cmd/bd/sync.go
3. server_export_import_auto.go handleExport and auto-export now include
tombstones in SearchIssues filter
- internal/rpc/server_export_import_auto.go
Also adds README.md documentation for sync.branch mode (bd-dsdh):
- Explains "always dirty" working tree behavior
- Shell alias tip: gs='git status -- ":!.beads/"'
- When to use bd sync --merge
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The sync.branch workflow copies JSONL to main working dir without
committing, which blocked bd sync --merge (required clean working dir).
Changes:
- Exclude .beads/ from dirty check in mergeSyncBranch
- Restore .beads/ to HEAD before merge to prevent conflicts
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Move runHook into build-tagged implementations (unix/windows) to keep unix syscalls off Windows builds.
- In unix implementation, guard nil Process, return wrapped kill errors except ESRCH, and document linkage to TestRunSync_KillsDescendants.
- On Windows, best-effort kill on timeout retains prior behavior.
- In tests, move testing.Short earlier and keep descendant-kill coverage on Linux.
Root cause: The merge driver matched issues by IssueKey (ID+CreatedAt+CreatedBy).
When timestamp precision differed (e.g., with/without nanoseconds), the same
issue was treated as two different issues, causing both tombstone and closed
versions to appear in the merge result.
Fix: Added ID-based fallback matching in merge3WayWithTTL. When key-based
matching fails but the same ID exists in the other side, use that for merging.
Also track processed IDs to prevent duplicates.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- IsExpired(): Negative TTL means immediately expired (for --hard mode)
- IsExpired(): ClockSkewGrace only added for TTLs > 1 hour
- bd cleanup --hard: Use negative TTL to prune freshly created tombstones
- bd delete --hard: New flag to immediately prune tombstones from JSONL
- Import: Add early tombstone check before all phases to prevent resurrection
The early tombstone check prevents ghost issues from being created when
tombstones exist in the DB. However, a deeper git merge issue (bd-ncwo)
can still cause resurrection when remote's status:closed wins the merge.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Ensure RunSync kills the hook process group on timeout so descendant processes (e.g. scripts that ) cannot keep the caller blocked. Add explanatory comment in and a Linux-only unit test in . Trim pid parsing newline in the test. All tests pass locally.
- Add bd cleanup --ephemeral flag for transient message cleanup (bd-kwro.9)
- Add Ephemeral filter to IssueFilter type
- Add ephemeral filtering to SQLite storage queries
Tests (bd-kwro.10):
- Add internal/hooks/hooks_test.go for hook system
- Add cmd/bd/mail_test.go for mail commands
- Add internal/storage/sqlite/graph_links_test.go for graph links
Documentation (bd-kwro.11):
- Add docs/messaging.md for full messaging reference
- Add docs/graph-links.md for graph link types
- Update AGENTS.md with inter-agent messaging section
- Update CHANGELOG.md with all bd-kwro features
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
