When 'bd sync --import-only' completes, it imports JSONL changes into
the database but doesn't update the database file's modification time.
This causes 'bd doctor' to incorrectly warn that 'JSONL is newer than
database' even when they're in sync.
Root cause: SQLite in WAL mode writes to beads.db-wal; the main beads.db
mtime often doesn't change until a checkpoint. bd doctor compares JSONL
mtime to beads.db mtime, so it can misfire without an mtime bump.
The fix adds touchDatabaseFile() that:
- Only runs when import actually made changes (not dry-run, not unchanged)
- Sets DB mtime to max(JSONL mtime, now) + 1ns to handle clock skew
- Is best-effort (logs warning on failure, doesn't fail import)
- Includes tests for basic touch and clock skew scenarios
Fixes: bd-g3ey
- docs/AGENT_MAIL_DEPLOYMENT.md: 10-step deployment plan for 13 workspaces
- docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md: Architecture and configuration guide
- scripts/setup-agent-mail-workspace.sh: Auto-configure .envrc per workspace
- scripts/start-agent-mail-server.sh: Start Agent Mail server
- scripts/stop-agent-mail-server.sh: Stop Agent Mail server
- scripts/agent-mail-status.sh: Monitor server and all channels
Supports 3-channel setup: beads.dev, vc.dev, wyvern.dev
Ready for 0.23.0 deployment with Agent Mail integration
Amp-Thread-ID: https://ampcode.com/threads/T-bc960efb-3ddc-4635-8c8e-a42a6e9e67d9
Co-authored-by: Amp <amp@ampcode.com>
When git pull encounters merge conflicts in .beads/beads.jsonl, the
post-merge hook runs 'bd sync --import-only' which previously failed
with an error message pointing users to manual resolution.
This commit adds automatic 3-way merge resolution as a fallback safety
net that works alongside the git merge driver.
Changes:
- Modified conflict detection in import.go to attempt automatic merge
- Added attemptAutoMerge() function that:
- Extracts git conflict stages (:1 base, :2 ours, :3 theirs)
- Invokes 'bd merge' command for intelligent field-level merging
- Writes merged result back and auto-stages the file
- Restarts import with merged JSONL on success
- Falls back to manual resolution instructions only if auto-merge fails
Defense-in-depth approach:
1. Primary: git merge driver prevents most conflicts during merge
2. Fallback: import auto-merge handles any that slip through
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Skip auto-import in PersistentPreRun for delete command
- Prevents resurrection of deleted issues from stale git JSONL
- Add TestBulkDeleteNoResurrection to prevent regression
- Verified with full test suite
Amp-Thread-ID: https://ampcode.com/threads/T-635e5cf4-fa2f-4ce3-9f05-43b48010baae
Co-authored-by: Amp <amp@ampcode.com>
Previously the hook redirected stderr to /dev/null, hiding useful error
messages like 'Git conflict markers detected'. Users only saw a generic
warning with no indication of the root cause.
Now captures and displays the actual error output, making it immediately
clear what went wrong (e.g., merge conflicts in JSONL).
Fixes bd-nszi
Amp-Thread-ID: https://ampcode.com/threads/T-6231e968-2c06-44ad-855d-bb5fafe452f6
Co-authored-by: Amp <amp@ampcode.com>
- Added __pycache__/ directories
- Added *.py[cod] and *.class files
- Removed tests/integration/__pycache__/ specific entry (now covered by general rule)
- Add AGENT_MAIL_QUICKSTART.md: 5-minute setup guide
- Add examples/python-agent/AGENT_MAIL_EXAMPLE.md: working code examples
- Add examples/python-agent/agent_with_mail.py: runnable multi-agent demo
- Update README.md: add Agent Mail to features and docs index
- Update AGENTS.md: enhance with quickstart/example references
- Update examples README: add Agent Mail example to index
Amp-Thread-ID: https://ampcode.com/threads/T-5d5e711d-7b5f-42ca-b75a-5b6cd843ad98
Co-authored-by: Amp <amp@ampcode.com>
- Add --whats-new flag to bd info command
- Display agent-relevant changes from last 3 versions
- Support both human-readable and JSON output
- Add version changelog data structure with workflow-impacting changes
- Add comprehensive tests for version changes structure
- Update AGENTS.md with whats-new documentation
Helps agents efficiently learn what changed between bd versions without
re-reading full documentation. Addresses weekly major version releases
requiring workflow adaptations.
Closes bd-eiz9
Amp-Thread-ID: https://ampcode.com/threads/T-5fe7e93d-7398-41c5-94bf-e914f2b331dd
Co-authored-by: Amp <amp@ampcode.com>
- Resolved beads.jsonl merge conflict
- Created test_reservation_ttl.py with 4 integration tests
- Tests short TTL (30s), reservation blocking, auto-release, and renewal
- Mock server implements full TTL management with expiration tracking
- All tests passing in ~57s (includes 30s wait for expiration)
- Updated integration test README with new test documentation
- Created SnapshotManager type in snapshot_manager.go
- Encapsulates all snapshot operations with clean API
- Added SnapshotStats for observability
- Reduced deletion_tracking.go from 557 to 153 lines (72% reduction)
- Enhanced merge output with statistics
- All tests passing
Amp-Thread-ID: https://ampcode.com/threads/T-d82acce9-170d-4e58-b227-fd33d48b8598
Co-authored-by: Amp <amp@ampcode.com>
- Tests 7 failure modes: connection refused, server crash, timeout, 500 errors, invalid token, malformed JSON, consistency
- All agents gracefully degrade to Beads-only mode
- Uses --no-daemon flag for fast execution (33s vs 162s)
- Mock HTTP server simulates all failure scenarios
- JSONL consistency verified across all failures
Amp-Thread-ID: https://ampcode.com/threads/T-a1a3b39a-9002-44c8-8048-3292d894f404
Co-authored-by: Amp <amp@ampcode.com>
Agents were failing with 'bd import' after nuking the database.
Now bd import automatically:
- Creates .beads/ directory if missing
- Detects prefix from imported issues (analyzes JSONL)
- Falls back to directory name if no issues
- Initializes database before proceeding
This fixes the common agent workflow: rm .beads/beads.db && bd import
Amp-Thread-ID: https://ampcode.com/threads/T-3ace45ce-3cd6-46ae-a201-39c3d7f48f0b
Co-authored-by: Amp <amp@ampcode.com>
Make bd list print exactly one line per issue by default to fix agent
miscounting. Agents were getting confused by the multi-line format and
incorrectly counting open issues.
The new compact format shows:
bd-zo7o [P0] [task] open @assignee [labels] - Title
The original detailed multi-line format is preserved behind --long flag.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
