- Add EntityRef type for structured entity references with URI support
- Add Creator field to Issue for tracking who created work
- Add Validation type and Validations field for proof-of-stake approvals
- Fix RemoveDependency FK violation on external deps (bd-a3sj)
- Include all new fields in content hash computation
- Full test coverage for all new types
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Co-Authored-By: Claude <noreply@anthropic.com>
Add bd mol current: Shows current position in molecule workflow
- Displays all steps with status indicators (done/current/ready/blocked/pending)
- Infers molecule from in_progress issues when no ID given
- Supports --for flag to check another agent's molecules
Add bd close --continue: Auto-advances to next molecule step
- After closing, finds parent molecule and next ready step
- Auto-claims next step by default (--no-auto to skip)
- Shows molecule completion message when all steps closed
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Improves the version bump workflow with missing local installation steps:
- --install: Now installs bd to BOTH ~/go/bin AND ~/.local/bin
- --mcp-local: Install beads-mcp from local source via uv/pip
- --restart-daemons: Restart all bd daemons to pick up new version
- --all: Shorthand for --install --mcp-local --restart-daemons
Also updated RELEASING.md with flag documentation and recommended workflow.
Closes bd-of2p
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Modernize sorting code to use Go 1.21+ slices package:
- Replace sort.Slice with slices.SortFunc across 16 files
- Use cmp.Compare for orderable types (strings, ints)
- Use time.Time.Compare for time comparisons
- Use cmp.Or for multi-field sorting
- Use slices.SortStableFunc where stability matters
Benefits: cleaner 3-way comparison, slightly better performance,
modern idiomatic Go.
Part of GH#692 refactoring epic.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix(daemon): include tombstones in exportToJSONLWithStore for sync propagation
The daemon's exportToJSONLWithStore() function was using an empty
IssueFilter which defaults to IncludeTombstones: false. This caused
deleted issues (tombstones) to be excluded from JSONL exports during
daemon sync cycles.
Bug scenario:
1. User runs `bd delete <issue>` with daemon active
2. Database correctly marks issue as tombstone
3. Main .beads/issues.jsonl correctly shows status:"tombstone"
4. But sync branch worktree JSONL still showed status:"open"
5. Other clones would not see the deletion
The fix adds IncludeTombstones: true to match the behavior of
exportToJSONL() in sync.go, ensuring tombstones propagate to other
clones and prevent resurrection of deleted issues.
Adds regression test TestExportToJSONLWithStore_IncludesTombstones
that verifies tombstones are included in daemon JSONL exports.
* fix: resolve all golangci-lint errors (cherry-pick from fix/linting-errors)
Cherry-picked linting fixes to ensure CI passes.
---------
Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
* fix(daemon): handle diverged sync branch with fetch-rebase-retry on push
When pushing to the sync branch, if the remote has newer commits that
the local worktree doesn't have, the push would fail with "fetch first"
error and the daemon would log the failure without recovery.
Bug scenario:
1. Clone A pushes commit X to sync branch
2. Clone B has local commit Y (not based on X)
3. Clone B's push fails with "fetch first" error
4. Without this fix: daemon logs failure and stops
5. With this fix: daemon fetches, rebases Y on X, and retries push
This fix adds fetch-rebase-retry logic to gitPushFromWorktree():
1. Detect push rejection due to remote having newer commits
2. Fetch the latest remote sync branch
3. Rebase local commits on top of remote
4. Retry the push
If rebase fails (e.g., due to conflicts), the rebase is aborted and
an error is returned with helpful context.
This allows multiple clones to push to the same sync branch without
manual intervention, as long as the changes don't conflict.
Adds integration test TestGitPushFromWorktree_FetchRebaseRetry that
verifies the fetch-rebase-retry behavior with diverged branches.
* fix: resolve all golangci-lint errors (cherry-pick from fix/linting-errors)
Cherry-picked linting fixes to ensure CI passes.
---------
Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
* fix(daemon): add periodic remote sync to event-driven mode
The event-driven daemon mode only triggered imports when the local JSONL
file changed (via file watcher) or when the fallback ticker fired (only
if watcher failed). This meant the daemon wouldn't see updates pushed
by other clones until something triggered a local file change.
Bug scenario:
1. Clone A creates an issue and daemon pushes to sync branch
2. Clone B's daemon only watched local file changes
3. Clone B would not see the new issue until something triggered local change
4. With this fix: Clone B's daemon periodically calls doAutoImport
This fix adds a 30-second periodic remote sync ticker that calls
doAutoImport(), which includes syncBranchPull() to fetch and import
updates from the remote sync branch.
This is essential for multi-clone workflows where:
- Clone A creates an issue and daemon pushes to sync branch
- Clone B's daemon needs to periodically pull to see the new issue
- Without periodic sync, Clone B would only see updates if its local
JSONL file happened to change
The 30-second interval balances responsiveness with network overhead.
Adds integration test TestEventDrivenLoop_PeriodicRemoteSync that
verifies the event-driven loop starts with periodic sync support.
* feat(daemon): add configurable interval for periodic remote sync
- Add BEADS_REMOTE_SYNC_INTERVAL environment variable to configure
the interval for periodic remote sync (default: 30s)
- Add getRemoteSyncInterval() function to parse the env var
- Minimum interval is 5s to prevent excessive load
- Setting to 0 disables periodic sync (not recommended)
- Add comprehensive integration tests for the configuration
Valid duration formats:
- "30s" (30 seconds)
- "1m" (1 minute)
- "5m" (5 minutes)
Tests added:
- TestEventDrivenLoop_HasRemoteSyncTicker
- TestGetRemoteSyncInterval_Default
- TestGetRemoteSyncInterval_CustomValue
- TestGetRemoteSyncInterval_MinimumEnforced
- TestGetRemoteSyncInterval_InvalidValue
- TestGetRemoteSyncInterval_Zero
- TestSyncBranchPull_FetchesRemoteUpdates
* fix: resolve all golangci-lint errors (cherry-pick from fix/linting-errors)
Cherry-picked linting fixes to ensure CI passes.
* feat(daemon): add config.yaml support for remote-sync-interval
- Add remote-sync-interval to .beads/config.yaml as alternative to
BEADS_REMOTE_SYNC_INTERVAL environment variable
- Environment variable takes precedence over config.yaml (follows
existing pattern for flush-debounce)
- Add config binding in internal/config/config.go
- Update getRemoteSyncInterval() to use config.GetDuration()
- Add doctor validation for remote-sync-interval in config.yaml
Configuration sources (in order of precedence):
1. BEADS_REMOTE_SYNC_INTERVAL environment variable
2. remote-sync-interval in .beads/config.yaml
3. DefaultRemoteSyncInterval (30s)
Example config.yaml:
remote-sync-interval: "1m"
---------
Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
- bd repo add/remove now writes to .beads/config.yaml instead of database
- bd repo remove deletes hydrated issues from the removed repo
- Added internal/config/repos.go for YAML config manipulation
- Added DeleteIssuesBySourceRepo for cleanup on remove
Fixes config disconnect where bd repo add wrote to DB but hydration read from YAML.
Breaking change: bd repo add no longer accepts optional alias argument.
Co-authored-by: Dylan Conlin <dylan.conlin@gmail.com>
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix(doctor): UX improvements for diagnostics and daemon
- Add Repo Fingerprint check to detect when database belongs to a
different repository (copied .beads dir or git remote URL change)
- Add interactive fix for repo fingerprint with options: update repo ID,
reinitialize database, or skip
- Add visible warning when daemon takes >5s to start, recommending
'bd doctor' for diagnosis
- Detect install method (Homebrew vs script) and show only relevant
upgrade command
- Improve WARNINGS section:
- Add icons (⚠ or ✖) next to each item
- Color numbers by severity (yellow for warnings, red for errors)
- Render entire error lines in red
- Sort by severity (errors first)
- Fix alignment with checkmarks above
- Use heavier fail icon (✖) for better visibility
- Add integration and validation tests for doctor fixes
* fix(lint): address errcheck and gosec warnings
- mol_bond.go: explicitly ignore ephStore.Close() error
- beads.go: add nosec for .gitignore file permissions (0644 is standard)
Previously, bd repo commands (list, add, remove, sync) failed with
'unexpected end of JSON input' when repos.additional config key
had an empty value. GetConfig() returns ('', nil) for missing keys,
and json.Unmarshal fails on empty strings.
Added empty value check before JSON parsing to return empty map
in this case. Added tests for repo config helper functions.
DeepWiki provides up-to-date documentation people can talk to, for every public repo in the world (after being added to it's index). Adding this badge to a repository Readme tells DeepWiki to refresh it's docs automatically.
The DeepWiki link for Beads is
https://deepwiki.com/steveyegge/beads
Implements wisp management commands for ephemeral molecules:
- bd wisp list: List wisps with stale detection
- bd wisp gc: Garbage collect orphaned wisps
- bd mol burn: Delete wisp without creating digest
Wisps are ephemeral molecules stored in .beads-wisp/ for patrol cycles
and operational loops that shouldn't accumulate in permanent storage.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add wisp detection in mol squash: checks wisp storage if not in main
- squashWispToPermanent: creates digest in permanent, deletes from wisp
- Fix directory naming: .beads-wisps → .beads-wisp (singular, matches doc)
- Add comprehensive tests for wisp squash scenarios
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Standardize terminology for ephemeral molecule storage:
- .beads-ephemeral/ → .beads-wisps/
- --ephemeral flag → --wisp flag
- All Ephemeral* functions → Wisp*
Wisps are the "steam" in Gas Town's engine metaphor - ephemeral
molecules that evaporate after squash.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When --ephemeral is set:
- Spawned molecules go to .beads-ephemeral/ instead of .beads/
- Ephemeral directory is automatically gitignored
- No auto-flush (ephemeral does not sync)
- Proto+proto bonding ignores flag (templates stay in permanent storage)
Updated help text to document wisp workflow (bond then squash/burn).
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add .beads-ephemeral/ storage support for ephemeral molecule tracking:
- FindEphemeralDir: locate ephemeral directory (sibling to .beads/)
- FindEphemeralDatabasePath: get DB path, create directory if needed
- NewEphemeralStorage: open ephemeral SQLite database
- EnsureEphemeralGitignore: add .beads-ephemeral/ to .gitignore
- IsEphemeralDatabase: check if a path is ephemeral storage
Part of the wisp storage epic for Gas Town patrol cycles.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
