- Add CheckOrphanedIssues to detect issues referenced in commits but still open
- Pattern matches (prefix-xxx) in git log against open issues in database
- Reports warning with issue IDs and commit hashes
- Add 8 comprehensive tests for the new check
Also:
- Add tests for mol spawn --attach functionality (bd-f7p1)
- Document commit message convention in AGENT_INSTRUCTIONS.md
- Fix CheckpointWAL to use wrapDBError for consistency
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The --as flag description correctly says "Custom title" but the variable
was named customID and dry-run output said "Custom ID". Fixed for consistency:
- Renamed variable customID -> customTitle
- Changed dry-run output from "Custom ID" to "Custom title"
Closes bd-e7ou
Document that wisps are intentionally local-only and use hard delete
instead of tombstones. This is by design - wisps never sync to other
clones, so tombstones are unnecessary overhead.
Closes bd-4bsb
GetConfig() returns ("", nil) for missing/empty config keys.
getRepoConfig() then tried json.Unmarshal([]byte(""), ...) which
fails with "unexpected end of JSON input".
Add empty value check before JSON parsing - return empty map when
config value is empty string.
Closes GH#680
Co-Authored-By: dylan-conlin <dylan-conlin@users.noreply.github.com>
Fixes:
- P0 priority preserved - omitempty removed from Priority field (GH#671)
- nil pointer check in markdown parsing (GH#674)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Remove cleanupSnapshots() and validateSnapshotConsistency() from
deletion_tracking.go - both were marked deprecated and never called.
The other two deprecated functions (getSnapshotStats, initializeSnapshotsIfNeeded)
are still used by tests and production code respectively.
Filed bd-xsl9 to track removal of legacy autoflush dual-path code.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Remove omitempty from Priority field so P0 issues preserve priority:0
- Add nil check for store in createIssuesFromMarkdown
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
gosec G204 warning - the cmdName comes from user configuration
(mail_delegate setting), not untrusted input.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Wisp = ephemeral vapor produced by the Steam Engine (Gas Town).
This aligns with the metaphor:
- Claude = Fire
- Claude Code = Steam
- Gas Town = Steam Engine
- Wisps = ephemeral vapor it produces
Changes:
- types.Issue.Ephemeral → types.Issue.Wisp
- types.IssueFilter.Ephemeral → types.IssueFilter.Wisp
- JSON field: "ephemeral" → "wisp"
- CLI flag: --ephemeral → --wisp (bd cleanup)
- All tests updated
Note: SQLite column remains "ephemeral" (no migration needed).
This is a breaking change for JSON consumers using 0.33.0.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Ephemeral molecules release:
- bd mol spawn creates ephemeral issues by default
- Ephemeral issues never export to JSONL
- bd mol squash with --summary for agent summaries
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Ephemeral issues should never be exported to issues.jsonl. They exist only
in SQLite and are shared via .beads/redirect pointers. This prevents
"zombie" issues from resurrecting after mol squash deletes them.
Changes:
- Filter ephemeral issues in autoflush, export, and multirepo_export
- Add --summary flag to bd mol squash for agent-provided summaries
- Fix DeleteIssue to also remove comments (missing cascade)
- Add tests for ephemeral filtering and comment deletion
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implements Tier 2 of the ephemeral molecule cleanup workflow. The squash
command compresses a molecule's ephemeral children into a single digest issue.
Features:
- Collects all ephemeral child issues of a molecule
- Generates a structured digest with execution summary
- Creates a non-ephemeral digest issue linked to the root
- Optionally deletes ephemeral children (default behavior)
- Supports --dry-run and --keep-children flags
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Molecule spawning now creates ephemeral issues that can be bulk-deleted
when closed using `bd cleanup --ephemeral`. This supports the ephemeral
molecule workflow pattern where execution traces are cleaned up while
outcomes persist.
Changes:
- Add `ephemeral` parameter to cloneSubgraph() and spawnMolecule()
- mol spawn: ephemeral=true by default, add --persistent flag to opt out
- mol run: ephemeral=true (molecule execution)
- mol bond: ephemeral=true (bonded protos)
- template instantiate: ephemeral=false (deprecated, backwards compat)
This is Tier 1 of the ephemeral molecule workflow epic (bd-2vh3).
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add done channel to runGitCmdWithTimeoutMsg and runCmdWithTimeoutMessage
so goroutines exit immediately when command completes, rather than
waiting for the full timeout duration.
Follow-up to PR #678.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add mail cwd clarification (run from YOUR directory, not ~/gt)
- Remove bd ready/list from workflow - overseer directs work
- Update Pro Tips and Important Rules sections
- Simplify CLI Quick Reference and Workflow sections
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
SQLite storage already excluded pinned issues from ready work
(bd-92u), but memory storage was missing this check. Pinned
issues are context markers, not actionable work items.
Closes bd-o9o.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Code review found that bondProtoProto was setting Labels on the compound
issue, but CreateIssue doesn't persist labels (they're stored separately.
Fixed by calling AddLabel after creating the compound.
Also added comprehensive tests for:
- isProto() - template label detection
- operandType() - proto vs molecule string
- minPriority() - priority comparison
- bondProtoProto() - compound proto creation with deps and labels
- bondProtoMol() - spawn proto and attach to molecule
- bondMolMol() - join two molecules with sequential/parallel bonds
Tests verify dependency types (blocks vs parent-child) based on bond type.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
EOF
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